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Anupama Jha
Anupama Jha
UW Data Science Postdoctoral Fellow, University of Washington
Verified email at uw.edu - Homepage
Title
Cited by
Cited by
Year
Integrative deep models for alternative splicing
A Jha, MR Gazzara, Y Barash
Bioinformatics 33 (14), i274-i282, 2017
682017
Enhanced integrated gradients: improving interpretability of deep learning models using splicing codes as a case study
A Jha, J K Aicher, M R Gazzara, D Singh, Y Barash
Genome biology 21 (1), 1-22, 2020
55*2020
Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes
MR Gazzara, MJ Mallory, R Roytenberg, JP Lindberg, A Jha, KW Lynch, ...
Genome research 27 (8), 1360-1370, 2017
472017
Multi-trait association studies discover pleiotropic loci between Alzheimer’s disease and cardiometabolic traits
WP Bone, KM Siewert, A Jha, D Klarin, SM Damrauer, KM Chang, ...
Alzheimer's research & therapy 13, 1-14, 2021
192021
RNA splicing analysis using heterogeneous and large RNA-seq datasets
J Vaquero-Garcia, JK Aicher, S Jewell, MR Gazzara, CM Radens, A Jha, ...
Nature Communications 14 (1), 1230, 2023
162023
Identifying common transcriptome signatures of cancer by interpreting deep learning models
A Jha, M Quesnel-Vallières, D Wang, A Thomas-Tikhonenko, KW Lynch, ...
Genome Biology 23 (1), 1-23, 2022
162022
MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis
B Slaff, CM Radens, P Jewell, A Jha, NF Lahens, GR Grant, ...
Nature communications 12 (1), 3353, 2021
162021
RNA-binding proteins PCBP1 and PCBP2 are critical determinants of murine erythropoiesis
X Ji, A Jha, J Humenik, LR Ghanem, A Kromer, C Duncan-Lewis, ...
Molecular and Cellular Biology 41 (9), e00668-20, 2021
72021
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools
A Jha, SC Bohaczuk, Y Mao, J Ranchalis, BJ Mallory, AT Min, MO Hamm, ...
bioRxiv, 2023.04. 20.537673, 2023
4*2023
An Optimizing Compiler for Turing Machine Description Language.
P Chakraborty, S Taneja, N Anand, A Jha, D Malik, A Nayar
IUP Journal of Computer Sciences 5 (3), 2011
42011
Enhancing Hi-C contact matrices for loop detection with Capricorn, a multi-view diffusion model
T Fang, Y Liu, A Woicik, M Lu, A Jha, X Wang, G Li, B Hristov, Z Liu, H Xu, ...
bioRxiv, 2023.10. 25.564065, 2023
2023
Generative modeling for RNA splicing code predictions and design
D Wu, A Jha, S Jewell, N Maus, JR Gardner, Y Barash
2023
Assembling the Building Blocks for a Unified Splicing Code
A Jha
University of Pennsylvania, 2020
2020
Predictive modeling framework for splice factor knockdown experiments
A Jha
Integrative RNA Biology Special Interest Group Meeting, 32, 2016
2016
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Articles 1–14