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Benjamin Basanta
Benjamin Basanta
Scientist II at Arzeda
Verified email at scripps.edu - Homepage
Title
Cited by
Cited by
Year
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5632020
Principles for designing proteins with cavities formed by curved β sheets
E Marcos, B Basanta, TM Chidyausiku, Y Tang, G Oberdorfer, G Liu, ...
Science 355 (6321), 201-206, 2017
1342017
An enumerative algorithm for de novo design of proteins with diverse pocket structures
B Basanta, MJ Bick, AK Bera, C Norn, CM Chow, LP Carter, I Goreshnik, ...
Proceedings of the National Academy of Sciences 117 (36), 22135-22145, 2020
642020
Interplay of disordered and ordered regions of a human small heat shock protein yields an ensemble of ‘quasi-ordered’states
AF Clouser, HER Baughman, B Basanta, M Guttman, A Nath, RE Klevit
Elife 8, e50259, 2019
482019
Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts
F Barone, F Dorr, LE Marasco, S Mildiner, IL Patop, S Sosa, LG Vattino, ...
Synthetic Biology 2 (1), ysx006, 2017
182017
Design and optimization of enzymatic activity in a de novo β‐barrel scaffold
Y Kipnis, AO Chaib, AA Vorobieva, G Cai, G Reggiano, B Basanta, ...
Protein Science 31 (11), e4405, 2022
92022
Introduction of a polar core into the de novo designed protein T op7
B Basanta, KK Chan, P Barth, T King, TR Sosnick, JR Hinshaw, G Liu, ...
Protein Science 25 (7), 1299-1307, 2016
82016
Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core
DI Kisiela, P Magala, G Interlandi, LA Carlucci, A Ramos, V Tchesnokova, ...
PLoS pathogens 17 (4), e1009440, 2021
62021
A guided approach for subtomogram averaging of challenging macromolecular assemblies
B Basanta, S Chowdhury, GC Lander, DA Grotjahn
Journal of Structural Biology: X 4, 100041, 2020
62020
A case for glycerol as an acceptable additive for single-particle cryoEM samples
B Basanta, MM Hirschi, DA Grotjahn, GC Lander
Acta Crystallographica Section D: Structural Biology 78 (1), 124-135, 2022
52022
Fabrication of Monolayer Graphene-Coated Grids for Cryoelectron Microscopy
B Basanta, W Chen, DE Pride, GC Lander
JoVE (Journal of Visualized Experiments), e65702, 2023
22023
SensAr: An arsenic biosensor for drinking water
AD Nadra, B Basanta, H Bonomi, N Carlotto, M Giménez, A Grande, ...
5th International Congress on Arsenic in the Environment. Buenos Aires: CRC …, 2014
22014
The conformational landscape of human transthyretin revealed by cryo-EM
B Basanta, K Nugroho, NY Yan, GM Kline, ET Powers, FJ Tsai, M Wu, ...
bioRxiv, 2024.01. 23.576879, 2024
12024
High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector
LM Chan, BJ Courteau, A Maker, M Wu, B Basanta, H Mehmood, ...
bioRxiv, 2024.02. 14.580363, 2024
2024
A 2.7 angstrom cryo-EM reconstruction of transthyretin (55kDa) covalently bound to a small molecule
B Basanta, N Yang, K Nugroho, E Powers, J Kelly, G Lander
PROTEIN SCIENCE 32, 2023
2023
Design and optimization of enzymatic activity in a de novo฀-barrel scaffold
Y Kipnis, AO Chaib, AA Vorobieva, G Cai, G Reggiano, B Basanta, ...
2022
BIOTIN BINDER DESIGN USING DE NOVO PROTEIN SCAFFOLDS
GR Lee, A Vorobieva, B Weitzner, B Basanta, D Baker
PROTEIN SCIENCE 28, 75-75, 2019
2019
A GENERATIVE ALGORITHM FOR PROTEINS FROM THE NTF2-LIKE SUPERFAMILY
B Basanta, M Bick, T Baughman, P Leung, E Nalefski, D Baker
PROTEIN SCIENCE 28, 64-65, 2019
2019
Beyond single-protein de novo design: A generative algorithm for the NTF2-like superfamily
B Basanta
2019
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Articles 1–19