Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 563 | 2020 |
Principles for designing proteins with cavities formed by curved β sheets E Marcos, B Basanta, TM Chidyausiku, Y Tang, G Oberdorfer, G Liu, ... Science 355 (6321), 201-206, 2017 | 134 | 2017 |
An enumerative algorithm for de novo design of proteins with diverse pocket structures B Basanta, MJ Bick, AK Bera, C Norn, CM Chow, LP Carter, I Goreshnik, ... Proceedings of the National Academy of Sciences 117 (36), 22135-22145, 2020 | 64 | 2020 |
Interplay of disordered and ordered regions of a human small heat shock protein yields an ensemble of ‘quasi-ordered’states AF Clouser, HER Baughman, B Basanta, M Guttman, A Nath, RE Klevit Elife 8, e50259, 2019 | 48 | 2019 |
Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts F Barone, F Dorr, LE Marasco, S Mildiner, IL Patop, S Sosa, LG Vattino, ... Synthetic Biology 2 (1), ysx006, 2017 | 18 | 2017 |
Design and optimization of enzymatic activity in a de novo β‐barrel scaffold Y Kipnis, AO Chaib, AA Vorobieva, G Cai, G Reggiano, B Basanta, ... Protein Science 31 (11), e4405, 2022 | 9 | 2022 |
Introduction of a polar core into the de novo designed protein T op7 B Basanta, KK Chan, P Barth, T King, TR Sosnick, JR Hinshaw, G Liu, ... Protein Science 25 (7), 1299-1307, 2016 | 8 | 2016 |
Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core DI Kisiela, P Magala, G Interlandi, LA Carlucci, A Ramos, V Tchesnokova, ... PLoS pathogens 17 (4), e1009440, 2021 | 6 | 2021 |
A guided approach for subtomogram averaging of challenging macromolecular assemblies B Basanta, S Chowdhury, GC Lander, DA Grotjahn Journal of Structural Biology: X 4, 100041, 2020 | 6 | 2020 |
A case for glycerol as an acceptable additive for single-particle cryoEM samples B Basanta, MM Hirschi, DA Grotjahn, GC Lander Acta Crystallographica Section D: Structural Biology 78 (1), 124-135, 2022 | 5 | 2022 |
Fabrication of Monolayer Graphene-Coated Grids for Cryoelectron Microscopy B Basanta, W Chen, DE Pride, GC Lander JoVE (Journal of Visualized Experiments), e65702, 2023 | 2 | 2023 |
SensAr: An arsenic biosensor for drinking water AD Nadra, B Basanta, H Bonomi, N Carlotto, M Giménez, A Grande, ... 5th International Congress on Arsenic in the Environment. Buenos Aires: CRC …, 2014 | 2 | 2014 |
The conformational landscape of human transthyretin revealed by cryo-EM B Basanta, K Nugroho, NY Yan, GM Kline, ET Powers, FJ Tsai, M Wu, ... bioRxiv, 2024.01. 23.576879, 2024 | 1 | 2024 |
High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector LM Chan, BJ Courteau, A Maker, M Wu, B Basanta, H Mehmood, ... bioRxiv, 2024.02. 14.580363, 2024 | | 2024 |
A 2.7 angstrom cryo-EM reconstruction of transthyretin (55kDa) covalently bound to a small molecule B Basanta, N Yang, K Nugroho, E Powers, J Kelly, G Lander PROTEIN SCIENCE 32, 2023 | | 2023 |
Design and optimization of enzymatic activity in a de novo-barrel scaffold Y Kipnis, AO Chaib, AA Vorobieva, G Cai, G Reggiano, B Basanta, ... | | 2022 |
BIOTIN BINDER DESIGN USING DE NOVO PROTEIN SCAFFOLDS GR Lee, A Vorobieva, B Weitzner, B Basanta, D Baker PROTEIN SCIENCE 28, 75-75, 2019 | | 2019 |
A GENERATIVE ALGORITHM FOR PROTEINS FROM THE NTF2-LIKE SUPERFAMILY B Basanta, M Bick, T Baughman, P Leung, E Nalefski, D Baker PROTEIN SCIENCE 28, 64-65, 2019 | | 2019 |
Beyond single-protein de novo design: A generative algorithm for the NTF2-like superfamily B Basanta | | 2019 |