| ROTS: An R package for reproducibility-optimized statistical testing T Suomi, F Seyednasrollah, MK Jaakkola, T Faux, LL Elo PLoS computational biology 13 (5), e1005562, 2017 | 117 | 2017 |
| Histone deacetylases 1 and 2 restrain CD4+ cytotoxic T lymphocyte differentiation T Preglej, P Hamminger, M Luu, T Bulat, L Andersen, L Göschl, V Stolz, ... JCI insight 5 (4), 2020 | 30 | 2020 |
| A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection S Fourati, A Talla, M Mahmoudian, JG Burkhart, R Klén, R Henao, T Yu, ... Nature communications 9 (1), 4418, 2018 | 16 | 2018 |
| The transcription factor MAZR/PATZ1 regulates the development of FOXP3+ regulatory T cells L Andersen, AF Gülich, M Alteneder, T Preglej, MJ Orola, N Dhele, V Stolz, ... Cell reports 29 (13), 4447-4459. e6, 2019 | 14 | 2019 |
| Histone H3K4me3 breadth in hypoxia reveals endometrial core functions and stress adaptation linked to endometriosis KT Rytkönen, T Faux, M Mahmoudian, T Heinosalo, MC Nnamani, ... Iscience 25 (5), 2022 | 4 | 2022 |
| Complex Interplay Between MAZR and Runx3 Regulates the Generation of Cytotoxic T Lymphocyte and Memory T Cells AF Gülich, R Rica, C Tizian, C Viczenczova, K Khamina, T Faux, ... Frontiers in Immunology 12, 535039, 2021 | 4 | 2021 |
| Differential ATAC-seq and ChIP-seq peak detection using ROTS T Faux, KT Rytkönen, M Mahmoudian, N Paulin, S Junttila, A Laiho, ... NAR genomics and bioinformatics 3 (3), lqab059, 2021 | 3 | 2021 |
| RepViz: a replicate-driven R tool for visualizing genomic regions T Faux, KT Rytkönen, A Laiho, LL Elo BMC Research Notes 12, 1-6, 2019 | 1 | 2019 |
| COMPUTATIONAL METHODS FOR STUDYING EPIGENOMIC REGULATION T Faux | | |
