| Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations MJ Hallock, JE Stone, E Roberts, C Fry, Z Luthey-Schulten Parallel computing 40 (5-6), 86-99, 2014 | 55 | 2014 |
| Evaluation of emerging energy-efficient heterogeneous computing platforms for biomolecular and cellular simulation workloads JE Stone, MJ Hallock, JC Phillips, JR Peterson, Z Luthey-Schulten, ... 2016 IEEE International Parallel and Distributed Processing Symposium …, 2016 | 34 | 2016 |
| Toward a whole-cell model of ribosome biogenesis: kinetic modeling of SSU assembly TM Earnest, J Lai, K Chen, MJ Hallock, JR Williamson, Z Luthey-Schulten Biophysical journal 109 (6), 1117-1135, 2015 | 31 | 2015 |
| Ribosome biogenesis in replicating cells: integration of experiment and theory TM Earnest, JA Cole, JR Peterson, MJ Hallock, TE Kuhlman, ... Biopolymers 105 (10), 735-751, 2016 | 17 | 2016 |
| A problem solving environment for stochastic biological simulations JR Peterson, MJ Hallock, JA Cole, Z Luthey-Schulten Proceedings High Performance Computing Networking, Storage and Analysis …, 2013 | 16 | 2013 |
| Calcium-induced lipid nanocluster structures: sculpturing of the plasma membrane MJ Hallock, AI Greenwood, Y Wang, JH Morrissey, E Tajkhorshid, ... Biochemistry 57 (50), 6897-6905, 2018 | 15 | 2018 |
| Stochastic simulations of cellular processes: from single cells to colonies J Cole, MJ Hallock, P Labhsetwar, JR Peterson, JE Stone, ... Computational Systems Biology: From Molecular Mechanisms to Disease: Second …, 2013 | 10 | 2013 |
| Hybrid CME–ODE method for efficient simulation of the galactose switch in yeast DM Bianchi, JR Peterson, TM Earnest, MJ Hallock, Z Luthey‐Schulten IET Systems Biology 12 (4), 170-176, 2018 | 9 | 2018 |
| Improving reaction kernel performance in lattice microbes: particle-wise propensities and run-time generated code MJ Hallock, Z Luthey-Schulten 2016 IEEE International Parallel and Distributed Processing Symposium …, 2016 | 8 | 2016 |
| Lattice microbes problem solving environment instruction guide JR Peterson, MJ Hallock, E Roberts, JA Cole, P Labhsetwar, JE Stone, ... | 2 | 2014 |
| VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy MC Brothers, AE Nesbitt, MJ Hallock, SG Rupasinghe, M Tang, J Harris, ... Journal of biomolecular NMR 52, 41-56, 2012 | 2 | 2012 |
| Abstract P1-08-31: Simbiosys tumorscope: Biophysical modeling of patient-specific response to chemotherapy JA Cole Jr, JR Peterson, TM Earnest, MJ Hallock, DJ Cook, E Braun, ... Cancer Research 82 (4_Supplement), P1-08-31-P1-08-31, 2022 | 1 | 2022 |
| Abstract P1-06-04: SimBioSys TumorScope: Spatio-temporal modeling of the breast tumor microenvironment accurately predicts chemotherapeutic response JA Cole Jr, JR Peterson, TM Earnest, MJ Hallock, E Braun Cancer Research 80 (4_Supplement), P1-06-04-P1-06-04, 2020 | 1 | 2020 |
| Calcium-Induced Sculpturing of the Plasma Membrane: Lipid Microclusters Cast by Anionic Lipids MJ Hallock, A Greenwood, Y Wang, JH Morrissey, E Tajkhorshid, ... Biophysical Journal 112 (3), 467a-468a, 2017 | 1 | 2017 |
| Integrating imaging and multi-omics data to elucidate racial differences in breast tumor biology to optimize precision oncology approaches and patient outcome N Liadis, T Earnest, E Braun, A Antony, L Munn, M Hallock, D Cook, ... Cancer Research 82 (12_Supplement), 474-474, 2022 | | 2022 |
| A multi-scale analysis and visualization platform for cancer data-deriving tumor microenvironment behavior from pathology and transcriptomics JR Peterson, M Shin, P Carrigan, MJ Hallock, S Patel, TSBS Team Cancer Research 82 (12_Supplement), 469-469, 2022 | | 2022 |
| Spatio-temporal modeling of the tumor microenvironment for prediction of patient-specific response to chemotherapy JA Cole, JR Peterson, TM Earnest, MJ Hallock, D Cook, E Braun, ... Cancer Research 82 (12_Supplement), 1217-1217, 2022 | | 2022 |
| 51P Novel platform combines pathology and transcriptomics for a multi-scale analysis and visualization of the breast tumor heterogeneity J Peterson, M Shin, M Hallock, S Patel Annals of Oncology 33, S144, 2022 | | 2022 |
| A transdisciplinary approach for characterizing racial differences in the biology of breast cancer by integrating imaging and-omics data N Liadis, T Earnest, E Bruan, A Antony, M Hallock, D Cook CANCER RESEARCH 82 (4), 2022 | | 2022 |
| Abstract P3-14-06: A transdisciplinary approach for characterizing racial differences in the biology of breast cancer by integrating imaging and-omics data N Liadis, T Earnest, E Bruan, A Antony, M Hallock, D Cook Cancer Research 82 (4_Supplement), P3-14-06-P3-14-06, 2022 | | 2022 |
