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Md Shamimuzzaman
Md Shamimuzzaman
Research Computational Biologist at USDA-ARS
Verified email at usda.gov
Title
Cited by
Cited by
Year
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks
MM Mahfouz, L Li, M Shamimuzzaman, A Wibowo, X Fang, JK Zhu
Proceedings of the National Academy of Sciences 108 (6), 2623-2628, 2011
6902011
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
M Shamimuzzaman, L Vodkin
BMC genomics 13, 1-14, 2012
1332012
The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring‐spot virus resistance locus
S Wu, MD Shamimuzzaman, H Sun, J Salse, X Sui, A Wilder, Z Wu, A Levi, ...
The Plant Journal 92 (5), 963-975, 2017
1132017
Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq
M Shamimuzzaman, L Vodkin
BMC genomics 14, 1-17, 2013
772013
Effectiveness of disinfectants against the spread of tobamoviruses: Tomato brown rugose fruit virus and Cucumber green mottle mosaic virus
B Chanda, M Shamimuzzaman, A Gilliard, KS Ling
Virology Journal 18, 1-12, 2021
592021
The regulatory landscape of early maize inflorescence development
RK Parvathaneni, E Bertolini, M Shamimuzzaman, D Vera, PY Lung, ...
Genome Biology 21 (165), 2020
392020
Bovine Genome Database: new annotation tools for a new reference genome
M Shamimuzzaman, JJ Le Tourneau, DR Unni, CM Diesh, DA Triant, ...
Nucleic acids research 48 (D1), D676-D681, 2020
292020
Plant canopy, tuber yield and growth analysis of potato under moderate and severe drought condition
Abdullah- Al-Mahmud, MA Hossain, M Abdullah-Al-Mamu, ...
Journal of Plant Sciences 2 (5), 201-208, 2014
282014
Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses
AT Walsh, DA Triant, JJ Le Tourneau, M Shamimuzzaman, CG Elsik
Nucleic Acids Research 50 (D1), D1032-D1039, 2022
262022
Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development
M Shamimuzzaman, L Vodkin
PLoS One 13 (3), e0194596, 2018
252018
Understanding the transmissibility of cucumber green mottle mosaic virus in watermelon seeds and seed health assays
X Sui, R Li, M Shamimuzzaman, Z Wu, KS Ling
Plant disease 103 (6), 1126-1131, 2019
222019
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database (MaizeGDB)
M Shamimuzzaman, JM Gardiner, AT Walsh, DA Triant, JJ Le Tourneau, ...
Frontiers in Plant Science 11, 1630, 2020
14*2020
Direct detection of transcription factors in cotyledons during seedling development using sensitive silicon-substrate photonic crystal protein arrays
SI Jones, Y Tan, M Shamimuzzaman, S George, BT Cunningham, ...
Plant physiology 167 (3), 639-649, 2015
142015
Effects of salt and water stress on leaf production, Sodium and Potassium Ion accumulation in soybean.
AK Shawquat, AA Mamun, AA Mahmud, M Bazzaz, A Hossain, S Alam, ...
Journal of Plant Sciences, 2014
132014
Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling
M Shamimuzzaman, L Vodkin
Functional and Integrative Genomics, 2014
112014
Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R11 in sunflower
G Ma, Y Long, Q Song, ZI Talukder, M Shamimuzzaman, L Qi
Scientific Reports 11 (1), 777, 2021
82021
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato
C Padmanabhan, Y Zheng, M Shamimuzzaman, JR Wilson, A Gilliard, ...
Plos one 17 (5), e0257936, 2022
72022
Optimization of Minituber Size and Planting Distance for the Breeder Seed Production of Potato
MA Hossain, Abdullah-Al-Mahmud, M Abdullah-Al-Mamun, ...
American Journal of Agriculture and Forestry 3 (2), 58-64, 2015
72015
Genome-wide profiling of piRNAs in the whitefly Bemisia tabaci reveals cluster distribution and association with begomovirus transmission
M Shamimuzzaman, DK Hasegawa, W Chen, AM Simmons, Z Fei, ...
PLoS One 14 (3), e0213149, 2019
62019
Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission
DK Hasegawa, M Shamimuzzaman, W Chen, AM Simmons, Z Fei, ...
Insects 11 (9), 562, 2020
42020
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Articles 1–20