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Bram van Dijk
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Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements
B van Dijk, P Hogeweg, HM Doekes, N Takeuchi
Elife 9, e56801, 2020
362020
Towards evolutionary predictions: Current promises and challenges
MT Wortel, D Agashe, SF Bailey, C Bank, K Bisschop, T Blankers, ...
Evolutionary applications 16 (1), 3-21, 2023
222023
Transposable elements promote the evolution of genome streamlining
B van Dijk, F Bertels, L Stolk, N Takeuchi, PB Rainey
Philosophical Transactions of the Royal Society B, 2021
17*2021
In silico gene-level evolution explains microbial population diversity through differential gene mobility
B van Dijk, P Hogeweg
Genome biology and evolution 8 (1), 176-188, 2016
162016
Contingent evolution of alternative metabolic network topologies determines whether cross-feeding evolves
J Meijer, B van Dijk, P Hogeweg
Communications Biology 3 (1), 401, 2020
132020
Trusting the hand that feeds: microbes evolve to anticipate a serial transfer protocol as individuals or collectives
B van Dijk, J Meijer, TD Cuypers, P Hogeweg
BMC evolutionary biology 19, 1-18, 2019
92019
Evolution of genome fragility enables microbial division of labor
ES Colizzi, B van Dijk, RMH Merks, DE Rozen, RMA Vroomans
Molecular Systems Biology 19 (3), e11353, 2023
72023
The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity
MT Wortel, D Agashe, SF Bailey, C Bank, K Bisschop, T Blankers, ...
EvoEvoRxiv Preprints, 2022
72022
Can mobile genetic elements rescue genes from extinction?
B van Dijk
Current genetics 66 (6), 1069-1071, 2020
62020
Evolution of r-and K-selected species of Virtual Microbes: a case study in a simple fluctuating 2-resource environment
B van Dijk, T Cuypers, P Hogeweg
2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016
32016
Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome
B van Dijk, A Farr, P Buffard, F Giersdorf, J Meijer, BE Dutilh, PB Rainey
bioRxiv, 2023.02. 02.526783, 2023
22023
Multi-level evolution, differential gene mobility, and the persistence of population diversity
B van Dijk, P Hogeweg
Proceedings of the European Conference on Artificial Life 2015, York (UK), 9-11, 2015
22015
Factors that influence the caste ratio in a bacterial division of labour
LAA Domínguez, Z Yu, V Chopra, R Merks, B van Dijk, D Rozen
2024
Factors that influence the caste ratio in a bacterial division of labour
L Avitia Dominguez, Z Yu, V Chopra, RMH Merks, B van Dijk, D Rozen
bioRxiv, 2024.02. 28.582448, 2024
2024
Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
DR Garza, FAB von Meijenfeldt, B van Dijk, A Boleij, MA Huynen, ...
BMC ecology and evolution 22 (1), 101, 2022
2022
Cacatoo: building, exploring, and sharing spatially structured models of biological systems
B van Dijk
The Journal of Open Source Software 7 (70), 2022
2022
Towards evolutionary predictions: current promises and challenges
MT Wortel, D Agashe, SF Bailey, C Bank, K Bisschop, T Blankers, ...
Evolutionary Applications, 2021
2021
Microbial Evolution on a Virtual Grain of Sand
B van Dijk
Utrecht University, 2020
2020
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Artikelen 1–18