| Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies MJ Roach, SA Schmidt, AR Borneman BMC bioinformatics 19, 1-10, 2018 | 712 | 2018 |
| Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay MJ Roach, DL Johnson, J Bohlmann, HJJ van Vuuren, SJM Jones, ... PLoS genetics 14 (11), e1007807, 2018 | 96 | 2018 |
| New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species MJ Roach, AR Borneman BMC genomics 21, 1-14, 2020 | 29 | 2020 |
| Brettanomyces bruxellensis SSU1 Haplotypes Confer Different Levels of Sulfite Tolerance When Expressed in a Saccharomyces cerevisiae SSU1 Null Mutant C Varela, C Bartel, M Roach, A Borneman, C Curtin Applied and Environmental Microbiology 85 (4), e02429-18, 2019 | 21 | 2019 |
| Inactivating mutations in Irc7p are common in wine yeasts, attenuating carbon-sulfur β-lyase activity and volatile sulfur compound production AG Cordente, AR Borneman, C Bartel, D Capone, M Solomon, M Roach, ... Applied and Environmental Microbiology 85 (6), e02684-18, 2019 | 20 | 2019 |
| Philympics 2021: prophage predictions perplex programs MJ Roach, K McNair, SK Giles, L Inglis, E Pargin, S Roux, P Decewicz, ... bioRxiv, 2021.06. 03.446868, 2021 | 17 | 2021 |
| The human gut virome: composition, colonization, interactions, and impacts on human health E Pargin, MJ Roach, A Skye, B Papudeshi, LK Inglis, V Mallawaarachchi, ... Frontiers in Microbiology 14, 963173, 2023 | 13 | 2023 |
| Ten simple rules and a template for creating workflows-as-applications MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ... PLoS computational biology 18 (12), e1010705, 2022 | 13 | 2022 |
| No evidence known viruses play a role in the pathogenesis of onchocerciasis-associated epilepsy. An explorative metagenomic case-control study M Roach, A Cantu, MK Vieri, M Cotten, P Kellam, M Phan, L Hoek, ... Pathogens 10 (7), 787, 2021 | 13* | 2021 |
| Comparative genome analysis proposes three new Aureobasidium species isolated from grape juice CA Onetto, SA Schmidt, MJ Roach, AR Borneman FEMS Yeast Research 20 (6), foaa052, 2020 | 13 | 2020 |
| Phables: from fragmented assemblies to high-quality bacteriophage genomes V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ... Bioinformatics 39 (10), btad586, 2023 | 9 | 2023 |
| Hecatomb: an end-to-end research platform for viral metagenomics MJ Roach, SJ Beecroft, KA Mihindukulasuriya, L Wang, A Paredes, ... bioRxiv, 2022.05. 15.492003, 2022 | 9 | 2022 |
| Adaptive evolution of sulfite tolerance in Brettanomyces bruxellensis C Bartel, M Roach, C Onetto, C Curtin, C Varela, A Borneman FEMS Yeast Research 21 (5), foab036, 2021 | 9 | 2021 |
| The StkSR Two-Component System Influences Colistin Resistance in Acinetobacter baumannii SK Giles, UH Stroeher, B Papudeshi, RA Edwards, JAP Carlson-Jones, ... Microorganisms 10 (5), 985, 2022 | 6 | 2022 |
| Origin of Chardonnay clones with historical significance in Australia and California MJ Roach, AR Borneman, SA Schmidt Australian Journal of Grape and Wine Research 26 (4), 358-362, 2020 | 5 | 2020 |
| Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2 B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ... Microbial Genomics 9 (9), 001100, 2023 | 4* | 2023 |
| Single-cell gene expression links SARS-CoV-2 infection and gut serotonin AM Martin, M Roach, LA Jones, D Thorpe, RA Coleman, C Allman, ... Gut 72 (7), 1430-1431, 2023 | 4 | 2023 |
| The promise and pitfalls of prophages JC McKerral, B Papudeshi, LK Inglis, MJ Roach, P Decewicz, K McNair, ... bioRxiv, 2023 | 4 | 2023 |
| Phage diving: an exploration of the carcharhinid shark epidermal virome RD Hesse, M Roach, EN Kerr, B Papudeshi, LFO Lima, AZ Goodman, ... Viruses 14 (9), 1969, 2022 | 4 | 2022 |
| Dnaapler: A tool to reorient circular microbial genomes G Bouras, SR Grigson, B Papudeshi, V Mallawaarachchi, MJ Roach Journal of Open Source Software 9 (93), 5968, 2024 | 2 | 2024 |
Borneman AnthonyThe Australian Wine Research InstituteVerified email at awri.com.au
