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Brandon Monier
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Year
Interpretation of differential gene expression results of RNA-seq data: review and integration
A McDermaid, B Monier, J Zhao, B Liu, Q Ma
Briefings in bioinformatics 20 (6), 2044-2054, 2019
2162019
Ten years of the maize nested association mapping population: impact, limitations, and future directions
JL Gage, B Monier, A Giri, ES Buckler
The Plant Cell 32 (7), 2083-2093, 2020
902020
Machine learning-enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions
JN Ferguson, SB Fernandes, B Monier, ND Miller, D Allen, A Dmitrieva, ...
Plant Physiology 187 (3), 1481-1500, 2021
462021
Mycorrhiza-function, diversity, state of the art
A Varma, R Prasad, N Tuteja
Springer International Publishing, 2017
372017
IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis
B Monier, A McDermaid, C Wang, J Zhao, A Miller, A Fennell, Q Ma
PLoS computational biology 15 (2), e1006792, 2019
302019
The role of transposon inverted repeats in balancing drought tolerance and yield-related traits in maize
X Sun, Y Xiang, N Dou, H Zhang, S Pei, AV Franco, M Menon, B Monier, ...
Nature Biotechnology 41 (1), 120-127, 2023
242023
The Practical Haplotype Graph, a platform for storing and using pangenomes for imputation
PJ Bradbury, T Casstevens, SE Jensen, LC Johnson, ZR Miller, B Monier, ...
Bioinformatics 38 (15), 3698-3702, 2022
132022
Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance
JL Gage, S Mali, F McLoughlin, M Khaipho-Burch, B Monier, ...
Proceedings of the National Academy of Sciences 119 (14), e2112516119, 2022
132022
Inter-and intraspecific fungal diversity in the arbuscular mycorrhizal symbiosis
B Monier, V Peta, J Mensah, H Bücking
Mycorrhiza-function, diversity, state of the art, 253-274, 2017
102017
ViDGER: An R package for integrative interpretation of differential gene expression results of RNA-seq data
A McDermaid, B Monier, J Zhao, Q Ma
bioRxiv, 268896, 2018
72018
rTASSEL: an R interface to TASSEL for association mapping of complex traits
B Monier, TM Casstevens, PJ Bradbury, ES Buckler
BioRxiv, 2020.07. 21.209114, 2020
52020
rTASSEL: An R interface to TASSEL for analyzing genomic diversity
B Monier, TM Casstevens, PJ Bradbury, ES Buckler
Journal of Open Source Software 7 (76), 4530, 2022
22022
IRIS-DGE: an integrated RNA-seq data analysis and interpretation system for differential gene expression
B Monier, A McDermaid, J Zhao, A Fennell, Q Ma
22018
Microbial communities and their impact on bioenergy crops in dynamic environments
B Monier
South Dakota State University, 2018
12018
Muller's Ratchet in Action: The Erosion of Sexual Reproduction Genes in Domesticated Cassava (Manihot esculenta)
EM Long, MC Stitzer, B Monier, AJ Schulz, C Romay, K Robbins, ...
bioRxiv, 2024.02. 14.580345, 2024
2024
Fishing for a reelGene: evaluating gene models with evolution and machine learning
AJ Schulz, J Zhai, T AuBuchon-Elder, M El-Walid, TH Ferebee, ...
bioRxiv, 2023.09. 19.558246, 2023
2023
Elucidating the patterns of pleiotropy and its biological relevance in maize
M Khaipho-Burch, T Ferebee, A Giri, G Ramstein, B Monier, E Yi, ...
PLoS Genetics 19 (3), e1010664, 2023
2023
WEST Diversity Panel GBS information (Ferguson et al., 2020)
JN Ferguson, SB Fernandes, B Monier, ND Miller, D Allan, A Dmitrieva, ...
Univ. of Illinois at Urbana-Champaign, IL (United States), 2021
2021
Use of lumen apposing metal stent for pyloric stenosis refractory to balloon dilatation.
P Sethi, S Narayana Gowda, U Motapothula, B Baloun, M Atiq
Journal of Digestive Diseases 20 (12), 2019
2019
The Analysis of Cytotypic Variation and Construction of a BAC Library of Midwestern Prairie Cordgrass (Spartina pectinata Link) Genotypes
B Monier
South Dakota State University, 2013
2013
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Articles 1–20