| BRCA locus-specific loss of heterozygosity in germline BRCA1 and BRCA2 carriers KN Maxwell, B Wubbenhorst, BM Wenz, D De Sloover, J Pluta, L Emery, ... Nature Communications 8 (1), 319, 2017 | 274 | 2017 |
| Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing Y Jiang, Y Qiu, AJ Minn, NR Zhang Proceedings of the National Academy of Sciences 113 (37), E5528-E5537, 2016 | 242 | 2016 |
| SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references M Dong, A Thennavan, E Urrutia, Y Li, CM Perou, F Zou, Y Jiang Briefings in Bioinformatics 22 (1), 416-427, 2021 | 186 | 2021 |
| Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs A Yimit, O Adebali, A Sancar, Y Jiang Nature Communications 10 (1), 309, 2019 | 175 | 2019 |
| CODEX: a normalization and copy number variation detection method for whole exome sequencing Y Jiang, DA Oldridge, SJ Diskin, NR Zhang Nucleic Acids Research 43 (6), e39-e39, 2015 | 167 | 2015 |
| SCALE: modeling allele-specific gene expression by single-cell RNA sequencing Y Jiang, NR Zhang, M Li Genome Biology 18 (1), 1-15, 2017 | 102 | 2017 |
| Genetic and genomic characterization of 462 melanoma patient-derived xenografts, tumor biopsies, and cell lines B Garman, IN Anastopoulos, C Krepler, P Brafford, K Sproesser, Y Jiang, ... Cell Reports 21 (7), 1936-1952, 2017 | 77 | 2017 |
| CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing Y Jiang, R Wang, E Urrutia, IN Anastopoulos, KL Nathanson, NR Zhang Genome Biology 19, 1-13, 2018 | 70 | 2018 |
| SCOPE: a normalization and copy-number estimation method for single-cell DNA sequencing R Wang, DY Lin, Y Jiang Cell Systems 10 (5), 445-452. e6, 2020 | 64 | 2020 |
| SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble R Huh, Y Yang, Y Jiang, Y Shen, Y Li Nucleic acids research 48 (1), 86-95, 2020 | 60 | 2020 |
| Genome-wide circadian rhythm detection methods: systematic evaluations and practical guidelines W Mei, Z Jiang, Y Chen, L Chen, A Sancar, Y Jiang Briefings in Bioinformatics 22 (3), bbaa135, 2021 | 36 | 2021 |
| Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny E Urrutia, H Chen, Z Zhou, NR Zhang, Y Jiang Bioinformatics 34 (12), 2126-2128, 2018 | 36 | 2018 |
| Destin: toolkit for single-cell analysis of chromatin accessibility E Urrutia, L Chen, H Zhou, Y Jiang Bioinformatics 35 (19), 3818-3820, 2019 | 28 | 2019 |
| Single-nucleotide resolution analysis of nucleotide excision repair of ribosomal DNA in humans and mice Y Yang, J Hu, CP Selby, W Li, A Yimit, Y Jiang, A Sancar Journal of Biological Chemistry 294 (1), 210-217, 2019 | 27 | 2019 |
| Single-cell RNA sequencing reveals endothelial cell transcriptome heterogeneity under homeostatic laminar flow Z Liu, DL Ruter, K Quigley, NT Tanke, Y Jiang, VL Bautch Arteriosclerosis, Thrombosis, and Vascular Biology 41 (10), 2575-2584, 2021 | 24 | 2021 |
| A novel deep learning method for predictive modeling of microbiome data Y Wang, T Bhattacharya, Y Jiang, X Qin, Y Wang, Y Liu, AJ Saykin, ... Briefings in Bioinformatics 22 (3), bbaa073, 2021 | 21 | 2021 |
| Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome Y Jiang, W Li, LA Lindsey-Boltz, Y Yang, Y Li, A Sancar Journal of Biological Chemistry 296, 2021 | 18 | 2021 |
| Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells W Li, W Liu, A Kakoki, R Wang, O Adebali, Y Jiang, A Sancar Journal of Biological Chemistry 294 (15), 5914-5922, 2019 | 18 | 2019 |
| Allele-specific copy number estimation by whole exome sequencing H Chen, Y Jiang, KN Maxwell, KL Nathanson, N Zhang The annals of applied statistics 11 (2), 1169, 2017 | 16 | 2017 |
| Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions Y Jiang, Y Harigaya, Z Zhang, H Zhang, C Zang, NR Zhang Cell Systems 13 (9), 737-751. e4, 2022 | 14 | 2022 |
Nancy Ruonan ZhangUniversity of PennsylvaniaVerified email at wharton.upenn.edu
