| A general modeling strategy for gene regulatory networks with stochastic dynamics A Ribeiro, R Zhu, SA Kauffman Journal of computational Biology 13 (9), 1630-1639, 2006 | 149 | 2006 |
| Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models R Zhu, AS Ribeiro, D Salahub, SA Kauffman Journal of Theoretical Biology 246 (4), 725-745, 2007 | 147 | 2007 |
| Mutual information in random Boolean models of regulatory networks AS Ribeiro, SA Kauffman, J Lloyd-Price, B Samuelsson, JES Socolar Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 77 (1 …, 2008 | 146 | 2008 |
| Noisy attractors and ergodic sets in models of gene regulatory networks AS Ribeiro, SA Kauffman Journal of theoretical biology 247 (4), 743-755, 2007 | 129 | 2007 |
| Stochastic and delayed stochastic models of gene expression and regulation AS Ribeiro Mathematical biosciences 223 (1), 1-11, 2010 | 98 | 2010 |
| SGN Sim, a stochastic genetic networks simulator AS Ribeiro, J Lloyd-Price Bioinformatics 23 (6), 777-779, 2007 | 83 | 2007 |
| Effects of transcriptional pausing on gene expression dynamics T Rajala, A Häkkinen, S Healy, O Yli-Harja, AS Ribeiro PLoS computational biology 6 (3), e1000704, 2010 | 80 | 2010 |
| Dynamics of transcription driven by the tetA promoter, one event at a time, in live Escherichia coli cells AB Muthukrishnan, M Kandhavelu, J Lloyd-Price, F Kudasov, ... Nucleic acids research 40 (17), 8472-8483, 2012 | 76 | 2012 |
| Mytoe: automatic analysis of mitochondrial dynamics E Lihavainen, J Mäkelä, JN Spelbrink, AS Ribeiro Bioinformatics 28 (7), 1050-1051, 2012 | 69 | 2012 |
| Reversible disruption of neuronal mitochondria by ischemic and traumatic injury revealed by quantitative two-photon imaging in the neocortex of anesthetized mice M Kislin, J Sword, IV Fomitcheva, D Croom, E Pryazhnikov, E Lihavainen, ... Journal of Neuroscience 37 (2), 333-348, 2017 | 67 | 2017 |
| Delayed stochastic model of transcription at the single nucleotide level AS Ribeiro, OP Smolander, T Rajala, A Häkkinen, O Yli-Harja Journal of Computational Biology 16 (4), 539-553, 2009 | 65 | 2009 |
| Single-molecule dynamics of transcription of the lar promoter M Kandhavelu, A Häkkinen, O Yli-Harja, AS Ribeiro Physical Biology 9 (2), 026004, 2012 | 54 | 2012 |
| Dissecting the stochastic transcription initiation process in live Escherichia coli J Lloyd-Price, S Startceva, V Kandavalli, JG Chandraseelan, N Goncalves, ... DNA Research 23 (3), 203-214, 2016 | 53 | 2016 |
| CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli A Häkkinen, AB Muthukrishnan, A Mora, JM Fonseca, AS Ribeiro Bioinformatics 29 (13), 1708-1709, 2013 | 53 | 2013 |
| Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase A Fukuoh, G Cannino, M Gerards, S Buckley, S Kazancioglu, F Scialo, ... Molecular systems biology 10 (6), 734, 2014 | 49 | 2014 |
| In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps M Kandhavelu*, H Mannerström*, A Gupta, A Häkkinen, J Lloyd-Price, ... BMC systems biology 5 (1), 149, 2011 | 46 | 2011 |
| Stochastic sequence-level model of coupled transcription and translation in prokaryotes J Mäkelä, J Lloyd-Price, O Yli-Harja, AS Ribeiro BMC bioinformatics 12, 1-13, 2011 | 45 | 2011 |
| In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli A Gupta, J Lloyd-Price, R Neeli-Venkata, SMD Oliveira, AS Ribeiro Biophysical journal 106 (9), 1928-1937, 2014 | 43 | 2014 |
| In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter J Mäkelä, M Kandhavelu, SMD Oliveira, JG Chandraseelan, J Lloyd-Price, ... Nucleic acids research 41 (13), 6544-6552, 2013 | 42 | 2013 |
| Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE) S Chowdhury, M Kandhavelu, O Yli-Harja, AS Ribeiro BMC bioinformatics 14, 1-13, 2013 | 40 | 2013 |
Jason Lloyd-PriceGoogleVerified email at google.com
