| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 167 | 2022 |
| nmrML: a community supported open data standard for the description, storage, and exchange of NMR data D Schober, D Jacob, M Wilson, JA Cruz, A Marcu, JR Grant, A Moing, ... Analytical chemistry 90 (1), 649-656, 2018 | 59 | 2018 |
| Mondo: Unifying diseases for the world, by the world NA Vasilevsky, NA Matentzoglu, S Toro, JE Flack IV, H Hegde, DR Unni, ... medRxiv, 2022.04. 13.22273750, 2022 | 36 | 2022 |
| Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff, S Carbon, ... Database 2022, baac087, 2022 | 30 | 2022 |
| Accurate de novo identification of biosynthetic gene clusters with GECCO LM Carroll, M Larralde, JS Fleck, R Ponnudurai, A Milanese, E Cappio, ... BioRxiv, 2021.05. 03.442509, 2021 | 25 | 2021 |
| ISA API: An open platform for interoperable life science experimental metadata D Johnson, D Batista, K Cochrane, RP Davey, A Etuk, A Gonzalez-Beltran, ... GigaScience 10 (9), giab060, 2021 | 21 | 2021 |
| proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ... Nucleic acids research 51 (D1), D760-D766, 2023 | 18 | 2023 |
| Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes M Larralde Journal of Open Source Software 7 (72), 4296, 2022 | 15 | 2022 |
| mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data M Larralde, TN Lawson, RJM Weber, P Moreno, K Haug, P Rocca-Serra, ... Bioinformatics 33 (16), 2598-2600, 2017 | 13 | 2017 |
| PyHMMER: a Python library binding to HMMER for efficient sequence analysis M Larralde, G Zeller Bioinformatics 39 (5), btad214, 2023 | 12 | 2023 |
| Predicting stop codon reassignment improves functional annotation of bacteriophages R Cook, A Telatin, G Bouras, AP Camargo, M Larralde, RA Edwards, ... bioRxiv, 2023 | 1 | 2023 |
| Long-term fasting remodels gut microbial metabolism and host metabolism QR Ducarmon, F Grundler, C Giannopoulou, A Loume, N Karcher, ... bioRxiv, 2024.04. 19.590209, 2024 | | 2024 |
| Microbiomics boosts mining of natural products from the ocean L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... | | 2023 |
| A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance V Ramnath, M Larralde, P Menchik, AJ Buehler, AS Harrand, T Chung, ... bioRxiv, 2023.12. 20.572685, 2023 | | 2023 |
| SUPPLEMENTAL DATA mzML2ISA & nmrML2ISA: Generating enriched ISA-Tab metadata files from metabolomics XML data M Larralde, TN Lawson, RJM Weber, K Haug, P Rocca-Serra, P Moreno, ... | | 2017 |
| Project links M Larralde, OS Independent | | |
| A lightweight platform-accelerated library for biological motif scanning using position weight matrices. M Larralde | | |
