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Kai Zhang
Kai Zhang
Westlake University
Verified email at westlake.edu.cn - Homepage
Title
Cited by
Cited by
Year
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
12862020
Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours
JJ Milner, C Toma, B Yu, K Zhang, K Omilusik, AT Phan, D Wang, ...
Nature 552 (7684), 253-257, 2017
5882017
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang, A Motamedi, AK Shiau, ...
Nature communications 12 (1), 1337, 2021
3232021
A single-cell atlas of chromatin accessibility in the human genome
K Zhang, JD Hocker, M Miller, X Hou, J Chiou, OB Poirion, Y Qiu, YE Li, ...
Cell 184 (24), 5985-6001. e19, 2021
2442021
Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation
B Yu*, K Zhang*, JJ Milner, C Toma, R Chen, JP Scott-Browne, ...
Nature immunology 18 (5), 573-582, 2017
2272017
Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes
A Wang, J Chiou, OB Poirion, J Buchanan, MJ Valdez, JM Verheyden, ...
Elife 9, e62522, 2020
170*2020
Constructing 3D interaction maps from 1D epigenomes
Y Zhu, Z Chen, K Zhang, M Wang, D Medovoy, JW Whitaker, B Ding, N Li, ...
Nature communications 7 (1), 10812, 2016
1522016
An atlas of gene regulatory elements in adult mouse cerebrum
YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu, OB Poirion, B Li, ...
Nature 598 (7879), 129-136, 2021
1292021
Cardiac cell type–specific gene regulatory programs and disease risk association
JD Hocker, OB Poirion, F Zhu, J Buchanan, K Zhang, J Chiou, TM Wang, ...
Science advances 7 (20), eabf1444, 2021
782021
Signal-induced Brd4 release from chromatin is essential for its role transition from chromatin targeting to transcriptional regulation
N Ai, X Hu, F Ding, B Yu, H Wang, X Lu, K Zhang, Y Li, A Han, W Lin, ...
Nucleic acids research 39 (22), 9592-9604, 2011
612011
Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development
K Zhang, M Wang, Y Zhao, W Wang
Science advances 5 (3), eaav3262, 2019
522019
Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse
V Ngo, Z Chen, K Zhang, JW Whitaker, M Wang, W Wang
Proceedings of the National Academy of Sciences 116 (9), 3668-3677, 2019
422019
Systematic identification of protein combinations mediating chromatin looping
K Zhang, N Li, RI Ainsworth, W Wang
Nature communications 7 (1), 12249, 2016
412016
Identification of DNA motifs that regulate DNA methylation
M Wang, K Zhang, V Ngo, C Liu, S Fan, JW Whitaker, Y Chen, R Ai, ...
Nucleic Acids Research 47 (13), 6753–6768, 2019
372019
Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers
S Fan, J Tang, N Li, Y Zhao, R Ai, K Zhang, M Wang, W Du, W Wang
NPJ genomic medicine 4 (1), 2, 2019
372019
Systems-biology analysis of rheumatoid arthritis fibroblast-like synoviocytes implicates cell line-specific transcription factor function
RI Ainsworth, D Hammaker, G Nygaard, C Ansalone, C Machado, ...
Nature communications 13 (1), 6221, 2022
162022
A fast, scalable and versatile tool for analysis of single-cell omics data
K Zhang, NR Zemke, EJ Armand, B Ren
Nature methods 21 (2), 217-227, 2024
14*2024
Single-cell analysis of chromatin accessibility in the adult mouse brain
S Zu, YE Li, K Wang, EJ Armand, S Mamde, ML Amaral, Y Wang, A Chu, ...
Nature 624 (7991), 378-389, 2023
142023
Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation
PB Chen, PC Fiaux, K Zhang, B Li, N Kubo, S Jiang, R Hu, E Rooholfada, ...
Cell reports 41 (6), 2022
122022
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge
W Wei, Z Ji, Y He, K Zhang, Y Ha, Q Li, L Ohno-Machado
Database 2018, bay017, 2018
112018
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