Mapping the human genetic architecture of COVID-19 Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ... Nature 600 (7889), 472-477, 2021 | 716 | 2021 |
Efficient phasing and imputation of low-coverage sequencing data using large reference panels S Rubinacci, DM Ribeiro, RJ Hofmeister, O Delaneau Nature Genetics 53 (1), 120-126, 2021 | 221 | 2021 |
Genotype imputation using the positional burrows wheeler transform S Rubinacci, O Delaneau, J Marchini PLoS genetics 16 (11), e1009049, 2020 | 106 | 2020 |
Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank RJ Hofmeister, DM Ribeiro, S Rubinacci, O Delaneau Nature Genetics 55 (7), 1243-1249, 2023 | 29 | 2023 |
The molecular basis, genetic control and pleiotropic effects of local gene co-expression DM Ribeiro, S Rubinacci, A Ramisch, RJ Hofmeister, ET Dermitzakis, ... Nature communications 12 (1), 4842, 2021 | 25 | 2021 |
TISCO: Temporal scoping of facts A Rula, M Palmonari, S Rubinacci, AC Ngonga Ngomo, J Lehmann, ... Companion Proceedings of The 2019 World Wide Web Conference, 959-960, 2019 | 25 | 2019 |
Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes S Rubinacci, RJ Hofmeister, B Sousa da Mota, O Delaneau Nature Genetics 55 (7), 1088-1090, 2023 | 23 | 2023 |
Imputation of ancient human genomes B Sousa da Mota, S Rubinacci, DI Cruz Dávalos, CE G. Amorim, M Sikora, ... Nature Communications 14 (1), 3660, 2023 | 23* | 2023 |
Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer S Rubinacci, A Graudenzi, G Caravagna, G Mauri, J Osborne, ... Cancer informatics 14, CIN. S19965, 2015 | 19 | 2015 |
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs JE Gorzynski, HN De Jong, D Amar, C Hughes, A Ioannidis, R Bierman, ... medRxiv, 2020.07. 27.20163147, 2020 | 13 | 2020 |
Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility IV van Blokland, P Lanting, APS Ori, JM Vonk, RCA Warmerdam, ... Plos one 16 (8), e0255402, 2021 | 10 | 2021 |
Mapache: a flexible pipeline to map ancient DNA S Neuenschwander, DI Cruz Dávalos, L Anchieri, B Sousa da Mota, ... Bioinformatics 39 (2), btad028, 2023 | 6 | 2023 |
Parent-of-Origin inference for biobanks RJ Hofmeister, S Rubinacci, DM Ribeiro, A Buil, Z Kutalik, O Delaneau Nature Communications 13 (1), 6668, 2022 | 6* | 2022 |
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ... Nature communications 13 (1), 5107, 2022 | 6* | 2022 |
XSI—a genotype compression tool for compressive genomics in large biobanks R Wertenbroek, S Rubinacci, I Xenarios, Y Thoma, O Delaneau Bioinformatics 38 (15), 3778-3784, 2022 | 5 | 2022 |
μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data D Cozzi, M Rossi, S Rubinacci, T Gagie, D Köppl, C Boucher, P Bonizzoni Bioinformatics 39 (9), btad552, 2023 | 1* | 2023 |
Genotype imputation methods for next generation datasets S Rubinacci University of Oxford, 2020 | 1 | 2020 |
Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA A Garrido Marques, S Rubinacci, AS Malaspinas, O Delaneau, ... Scientific Reports 14 (1), 6227, 2024 | | 2024 |
SURFBAT: a surrogate family-based association test building on large imputation reference panels AF Herzig, S Rubinacci, G Marenne, H Perdry, FrEx Consortium, ... bioRxiv, 2023.01. 10.523404, 2023 | | 2023 |
A Genomics England haplotype reference panel and the imputation of the UK Biobank S Shi, S Rubinacci, S Hu, L Moutsianas, A Stuckey, AC Need, ... medRxiv, 2023.11. 06.23298035, 2023 | | 2023 |