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Simone Rubinacci
Simone Rubinacci
Brigham and Women's Hospital | Harvard Medical School
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Mapping the human genetic architecture of COVID-19
Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ...
Nature 600 (7889), 472-477, 2021
7162021
Efficient phasing and imputation of low-coverage sequencing data using large reference panels
S Rubinacci, DM Ribeiro, RJ Hofmeister, O Delaneau
Nature Genetics 53 (1), 120-126, 2021
2212021
Genotype imputation using the positional burrows wheeler transform
S Rubinacci, O Delaneau, J Marchini
PLoS genetics 16 (11), e1009049, 2020
1062020
Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
RJ Hofmeister, DM Ribeiro, S Rubinacci, O Delaneau
Nature Genetics 55 (7), 1243-1249, 2023
292023
The molecular basis, genetic control and pleiotropic effects of local gene co-expression
DM Ribeiro, S Rubinacci, A Ramisch, RJ Hofmeister, ET Dermitzakis, ...
Nature communications 12 (1), 4842, 2021
252021
TISCO: Temporal scoping of facts
A Rula, M Palmonari, S Rubinacci, AC Ngonga Ngomo, J Lehmann, ...
Companion Proceedings of The 2019 World Wide Web Conference, 959-960, 2019
252019
Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes
S Rubinacci, RJ Hofmeister, B Sousa da Mota, O Delaneau
Nature Genetics 55 (7), 1088-1090, 2023
232023
Imputation of ancient human genomes
B Sousa da Mota, S Rubinacci, DI Cruz Dávalos, CE G. Amorim, M Sikora, ...
Nature Communications 14 (1), 3660, 2023
23*2023
Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer
S Rubinacci, A Graudenzi, G Caravagna, G Mauri, J Osborne, ...
Cancer informatics 14, CIN. S19965, 2015
192015
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs
JE Gorzynski, HN De Jong, D Amar, C Hughes, A Ioannidis, R Bierman, ...
medRxiv, 2020.07. 27.20163147, 2020
132020
Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility
IV van Blokland, P Lanting, APS Ori, JM Vonk, RCA Warmerdam, ...
Plos one 16 (8), e0255402, 2021
102021
Mapache: a flexible pipeline to map ancient DNA
S Neuenschwander, DI Cruz Dávalos, L Anchieri, B Sousa da Mota, ...
Bioinformatics 39 (2), btad028, 2023
62023
Parent-of-Origin inference for biobanks
RJ Hofmeister, S Rubinacci, DM Ribeiro, A Buil, Z Kutalik, O Delaneau
Nature Communications 13 (1), 6668, 2022
6*2022
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy
VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ...
Nature communications 13 (1), 5107, 2022
6*2022
XSI—a genotype compression tool for compressive genomics in large biobanks
R Wertenbroek, S Rubinacci, I Xenarios, Y Thoma, O Delaneau
Bioinformatics 38 (15), 3778-3784, 2022
52022
μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data
D Cozzi, M Rossi, S Rubinacci, T Gagie, D Köppl, C Boucher, P Bonizzoni
Bioinformatics 39 (9), btad552, 2023
1*2023
Genotype imputation methods for next generation datasets
S Rubinacci
University of Oxford, 2020
12020
Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA
A Garrido Marques, S Rubinacci, AS Malaspinas, O Delaneau, ...
Scientific Reports 14 (1), 6227, 2024
2024
SURFBAT: a surrogate family-based association test building on large imputation reference panels
AF Herzig, S Rubinacci, G Marenne, H Perdry, FrEx Consortium, ...
bioRxiv, 2023.01. 10.523404, 2023
2023
A Genomics England haplotype reference panel and the imputation of the UK Biobank
S Shi, S Rubinacci, S Hu, L Moutsianas, A Stuckey, AC Need, ...
medRxiv, 2023.11. 06.23298035, 2023
2023
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