| Ecosystem-scale nutrient cycling responses to increasing air temperatures vary with lake trophic state KJ Farrell, NK Ward, AI Krinos, PC Hanson, V Daneshmand, ... Ecological Modelling 430, 109134, 2020 | 40 | 2020 |
| Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton H Alexander, SK Hu, AI Krinos, M Pachiadaki, BJ Tully, CJ Neely, T Reiter mBio 14 (6), e01676-23, 2023 | 28 | 2023 |
| Enhancing collaboration between ecologists and computer scientists: lessons learned and recommendations forward CC Carey, NK Ward, KJ Farrell, ME Lofton, AI Krinos, RP McClure, ... Ecosphere 10 (5), e02753, 2019 | 23 | 2019 |
| EUKulele: Taxonomic annotation of the unsung eukaryotic microbes AI Krinos, SK Hu, NR Cohen, H Alexander Journal of Open Source Software 6 (57), 2817, 2021 | 21 | 2021 |
| Seasonal changes and the unexpected impact of environmental disturbance on skin bacteria of individual amphibians in a natural habitat JB Walke, MH Becker, A Krinos, EAB Chang, C Santiago, TP Umile, ... FEMS Microbiology Ecology, 2020 | 13 | 2020 |
| Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications N Cohen, H Alexander, A Krinos, SK Hu, RH Lampe Frontiers in Marine Science, 858, 2022 | 8 | 2022 |
| Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly AI Krinos, NR Cohen, MJ Follows, H Alexander BMC bioinformatics 24 (1), 1-36, 2023 | 4 | 2023 |
| Estimating the maximal growth rates of eukaryotic microbes from cultures and metagenomes via codon usage patterns JL Weissman, ERO Dimbo, AI Krinos, C Neely, Y Yagues, D Nolin, S Hou, ... bioRxiv, 2021 | 4 | 2021 |
| Ocean acidification: effects of pH on 45Ca uptake by lobster branchiostegites L Nagle, S Brown, A Krinos, GA Ahearn Journal of Comparative Physiology B 188 (5), 739-747, 2018 | 4 | 2018 |
| Including variability in air temperature warming scenarios in a lake simulation model highlights uncertainty in predictions of cyanobacteria AI Krinos, KJ Farrell, V Daneshmand, KC Subratie, RJ Figueiredo, ... bioRxiv, 734285, 2019 | 3 | 2019 |
| Missing microbial eukaryotes and misleading meta-omic conclusions AI Krinos, M Mars Brisbin, SK Hu, NR Cohen, TA Rynearson, MJ Follows, ... bioRxiv, 2023.07. 30.551153, 2023 | 2 | 2023 |
| The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment BJ Tully, J Buongiorno, AB Cohen, JA Cram, AI Garber, SK Hu, AI Krinos, ... Frontiers in Education, 394, 2021 | 2 | 2021 |
| Parameter and Uncertainty Estimation for a Model of Atmospheric CO2 Observations A Krinos, A Maurais SIAM Undergraduate Journal, 2019 | 1 | 2019 |
| Resolving the impact of glacier-derived nutrients on marine phytoplankton using both observational and experimental approaches P White, M Bhatia, J Spence, M Cavaco, S Waterman, E Rowland, L Jabre, ... 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| The Elusive Ecological Roles of Microeukaryotes at Deep-Sea Hydrothermal Vents S Hu, R Anderson, A Krinos, H Alexander, M Pachiadaki, VP Edgcomb, ... 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| Augmenting a multi-decade time series with multiple meta-omics to uncover molecular mechanisms behind changing phytoplankton bloom dynamics in Massachusetts Bay MM Brisbin, A Krinos, S Shapiro, P Lopez, MR McIlvin, A Costa, MA Saito, ... 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| Shifts in phytoplankton temperature optima defined by environmental stress and cell size constraints SG Leles, L Breithaupt, A Krinos, H Alexander, NM Levine 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| Transcriptome data enable physiological model customization and illumine phytoplankton thermal response A Krinos, SG Leles, S Shapiro, Q Perian, NM Levine, MJ Follows, ... 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| Intraspecific diversity in thermal performance determines phytoplankton ecological niche AI Krinos, SK Shapiro, W Li, ST Haley, ST Dyhrman, S Dutkiewicz, ... bioRxiv, 2024.02. 14.580366, 2024 | | 2024 |
| Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake AI Krinos, RM Bowers, RR Rohwer, K McMahon, T Woyke, F Schulz bioRxiv, 2024.02. 09.579653, 2024 | | 2024 |
