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Thomas L. Madden
Thomas L. Madden
Staff Scientist, NCBI, NLM, NIH
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, ...
Nucleic acids research 25 (17), 3389-3402, 1997
858261997
BLAST+: architecture and applications
C Camacho, G Coulouris, V Avagyan, N Ma, J Papadopoulos, K Bealer, ...
BMC bioinformatics 10, 1-9, 2009
161842009
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction
J Ye, G Coulouris, I Zaretskaya, I Cutcutache, S Rozen, TL Madden
BMC bioinformatics 13, 1-11, 2012
62742012
Database resources of the national center for biotechnology information
EW Sayers, T Barrett, DA Benson, E Bolton, SH Bryant, K Canese, ...
Nucleic acids research 39 (suppl_1), D38-D51, 2010
4837*2010
NCBI BLAST: a better web interface
M Johnson, I Zaretskaya, Y Raytselis, Y Merezhuk, S McGinnis, ...
Nucleic acids research 36 (suppl_2), W5-W9, 2008
38832008
Database resources of the national center for biotechnology information
NCBI Resource Coordinators
Nucleic acids research 45 (D1), D12-D17, 2016
33132016
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
TA Tatusova, TL Madden
FEMS microbiology letters 174 (2), 247-250, 1999
23981999
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 36 (suppl_1), D13-D21, 2007
22082007
BLAST: at the core of a powerful and diverse set of sequence analysis tools
S McGinnis, TL Madden
Nucleic acids research 32 (suppl_2), W20-W25, 2004
21952004
Database resources of the national center for biotechnology information
Nucleic acids research 46 (D1), D8-D13, 2017
1748*2017
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer, L Aravind, TL Madden, S Shavirin, JL Spouge, YI Wolf, ...
Nucleic acids research 29 (14), 2994-3005, 2001
16442001
Database indexing for production MegaBLAST searches
A Morgulis, G Coulouris, Y Raytselis, TL Madden, R Agarwala, ...
Bioinformatics 24 (16), 1757-1764, 2008
13822008
The BLAST Sequence Analysis Tool
J McEntyre, J Ostell, T Madden
National Center for Biotechnology Information (US), 2002
1137*2002
BLAST: a more efficient report with usability improvements
GM Boratyn, C Camacho, PS Cooper, G Coulouris, A Fong, N Ma, ...
Nucleic acids research 41 (W1), W29-W33, 2013
11322013
IgBLAST: an immunoglobulin variable domain sequence analysis tool
J Ye, N Ma, TL Madden, JM Ostell
Nucleic acids research 41 (W1), W34-W40, 2013
11022013
Database resources of the National Center for Biotechnology
DL Wheeler, DM Church, S Federhen, AE Lash, TL Madden, JU Pontius, ...
Nucleic acids research 31 (1), 28-33, 2003
10792003
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 34 (suppl_1), D173-D180, 2006
884*2006
Domain enhanced lookup time accelerated BLAST
GM Boratyn, AA Schäffer, R Agarwala, SF Altschul, DJ Lipman, ...
Biology direct 7, 1-14, 2012
8702012
Database resources of the national center for biotechnology information
NR Coordinators
Nucleic acids research 41 (Database issue), D8, 2013
8222013
Database resources of the national center for biotechnology information
NR Coordinators
Nucleic acids research 41 (D1), D8-D20, 2012
8222012
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