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BIGCHEM publications
BIGCHEM publications
Horizon2020 Marie Skłodowska-Curie Innovative Training Network European Industrial Doctorate
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Title
Cited by
Cited by
Year
The rise of deep learning in drug discovery
H Chen, O Engkvist, Y Wang, M Olivecrona, T Blaschke
Drug discovery today 23 (6), 1241-1250, 2018
15722018
Molecular de-novo design through deep reinforcement learning
M Olivecrona, T Blaschke, O Engkvist, H Chen
Journal of cheminformatics 9, 1-14, 2017
10512017
Automating drug discovery
G Schneider
Nature reviews drug discovery 17 (2), 97-113, 2018
6332018
QSAR without borders
EN Muratov, J Bajorath, RP Sheridan, IV Tetko, D Filimonov, V Poroikov, ...
Chemical Society Reviews 49 (11), 3525-3564, 2020
5892020
Application of Generative Autoencoder in De Novo Molecular Design
T Blaschke, M Olivecrona, O Engkvist, J Bajorath, H Chen
Molecular informatics 37 (1-2), 1700123, 2018
4222018
Molecular representations in AI-driven drug discovery: a review and practical guide
L David, A Thakkar, R Mercado, O Engkvist
Journal of Cheminformatics 12 (1), 56, 2020
3582020
Interpretation of machine learning models using shapley values: application to compound potency and multi-target activity predictions
R Rodríguez-Pérez, J Bajorath
Journal of computer-aided molecular design 34 (10), 1013-1026, 2020
3022020
A de novo molecular generation method using latent vector based generative adversarial network
O Prykhodko, SV Johansson, PC Kotsias, J Arús-Pous, EJ Bjerrum, ...
Journal of Cheminformatics 11, 1-13, 2019
2882019
State-of-the-art augmented NLP transformer models for direct and single-step retrosynthesis
IV Tetko, P Karpov, R Van Deursen, G Godin
Nature communications 11 (1), 5575, 2020
2672020
Randomized SMILES strings improve the quality of molecular generative models
J Arús-Pous, SV Johansson, O Prykhodko, EJ Bjerrum, C Tyrchan, ...
Journal of cheminformatics 11, 1-13, 2019
2622019
REINVENT 2.0: an AI tool for de novo drug design
T Blaschke, J Arús-Pous, H Chen, C Margreitter, C Tyrchan, O Engkvist, ...
Journal of chemical information and modeling 60 (12), 5918-5922, 2020
2592020
Interpretation of compound activity predictions from complex machine learning models using local approximations and shapley values
R Rodríguez-Pérez, J Bajorath
Journal of medicinal chemistry 63 (16), 8761-8777, 2019
2322019
AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
S Genheden, A Thakkar, V Chadimová, JL Reymond, O Engkvist, ...
Journal of cheminformatics 12 (1), 70, 2020
2112020
On the Integration of In Silico Drug Design Methods for Drug Repurposing
E March-Vila, L Pinzi, N Sturm, A Tinivella, O Engkvist, H Chen, G Rastelli
Frontiers in pharmacology 8, 298, 2017
1892017
Transformer-CNN: Swiss knife for QSAR modeling and interpretation
P Karpov, G Godin, IV Tetko
Journal of Cheminformatics 12 (1), 1-12, 2020
1772020
Direct steering of de novo molecular generation with descriptor conditional recurrent neural networks
PC Kotsias, J Arús-Pous, H Chen, O Engkvist, C Tyrchan, EJ Bjerrum
Nature Machine Intelligence 2 (5), 254-265, 2020
1642020
Exploring the GDB-13 chemical space using deep generative models
J Arús-Pous, T Blaschke, S Ulander, JL Reymond, H Chen, O Engkvist
Journal of cheminformatics 11, 1-14, 2019
1582019
SMILES-based deep generative scaffold decorator for de-novo drug design
J Arús-Pous, A Patronov, EJ Bjerrum, C Tyrchan, JL Reymond, H Chen, ...
Journal of cheminformatics 12, 1-18, 2020
1432020
Building attention and edge message passing neural networks for bioactivity and physical–chemical property prediction
M Withnall, E Lindelöf, O Engkvist, H Chen
Journal of Cheminformatics 12 (1), 1, 2020
1382020
BIGCHEM: challenges and opportunities for big data analysis in chemistry
IV Tetko, O Engkvist, U Koch, JL Reymond, H Chen
Molecular informatics 35 (11-12), 615-621, 2016
1302016
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