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Srirupa Chakraborty
Srirupa Chakraborty
Northeastern University
Verified email at northeastern.edu
Title
Cited by
Cited by
Year
The SARS-CoV-2 Spike variant D614G favors an open conformational state
RA Mansbach, S Chakraborty, K Nguyen, DC Montefiori, B Korber, ...
Biophysical Journal 120 (3), 298a, 2021
2062021
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ...
Cell host & microbe 29 (7), 1093-1110, 2021
832021
Visualization of the HIV-1 Env glycan shield across scales
ZT Berndsen, S Chakraborty, X Wang, CA Cottrell, JL Torres, JK Diedrich, ...
Proceedings of the National Academy of Sciences 117 (45), 28014-28025, 2020
642020
A mechanism for acetylcholine receptor gating based on structure, coupling, phi, and flip
S Gupta, S Chakraborty, R Vij, A Auerbach
Journal of General Physiology 149 (1), 85-103, 2017
542017
Exploring the role of glycans in the interaction of SARS-CoV-2 RBD and human receptor ACE2
K Nguyen, S Chakraborty, RA Mansbach, PD Manrique, B Korber, ...
Biophysical Journal 120 (3), 15a, 2021
332021
Emergence of alternative structures in amyloid beta 1-42 monomeric landscape by N-terminal hexapeptide amyloid inhibitors
S Chakraborty, P Das
Scientific Reports 7 (1), 9941, 2017
282017
Functional differences between neurotransmitter binding sites of muscle acetylcholine receptors
TK Nayak, I Bruhova, S Chakraborty, S Gupta, W Zheng, A Auerbach
Proceedings of the National Academy of Sciences 111 (49), 17660-17665, 2014
252014
Structural correlates of affinity in fetal versus adult endplate nicotinic receptors
TK Nayak, S Chakraborty, W Zheng, A Auerbach
Nature communications 7 (1), 11352, 2016
192016
Decrypting the structural, dynamic, and energetic basis of a monomeric kinesin interacting with a tubulin dimer in three ATPase states by all-atom molecular dynamics simulation
S Chakraborty, W Zheng
Biochemistry 54 (3), 859-869, 2015
172015
Network for Genomic Surveillance in South Africa (NGS-SA). HIV-1 and SARS-CoV-2: patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler
Cell Host Microbe 29, 1093-1110, 2021
132021
Quantification of the resilience and vulnerability of HIV-1 native glycan shield at atomistic detail
S Chakraborty, ZT Berndsen, NW Hengartner, BT Korber, AB Ward, ...
IScience 23 (12), 2020
13*2020
Function of the M1 π‐helix in endplate receptor activation and desensitization
P Purohit, S Chakraborty, A Auerbach
The Journal of physiology 593 (13), 2851-2866, 2015
132015
The SARS-CoV-2 Spike variant D614G favors an open conformational state. Sci Adv. 2021; 7: eabf3671
RA Mansbach, S Chakraborty, K Nguyen, DC Montefiori, B Korber, ...
9
Development of Martini 2.2 parameters for N-glycans: a case study of the HIV-1 Env glycoprotein dynamics
S Chakraborty, K Wagh, S Gnanakaran, CA López
Glycobiology 31 (7), 787-799, 2021
82021
Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design
PD Manrique, S Chakraborty, R Henderson, RJ Edwards, R Mansbach, ...
Iscience 26 (1), 2023
62023
Upper limit on the cosmic gamma-ray burst rate from high energy diffuse neutrino background
P Bhattacharjee, S Chakraborty, SD Gupta, K Kar
Physical Review D 77 (4), 043008, 2008
62008
Graph-directed approach for downselecting toxins for experimental structure determination
RA Mansbach, S Chakraborty, T Travers, S Gnanakaran
Marine Drugs 18 (5), 256, 2020
52020
Fabricating paper based devices using correction pens. Sci Rep 9: 1752
NK Mani, A Prabhu, SK Biswas, S Chakraborty
52019
Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus
F Zhao, ZT Berndsen, N Pedreño-Lopez, A Burns, JD Allen, S Barman, ...
Nature communications 13 (1), 5236, 2022
32022
A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence
S Welbourn, S Chakraborty, JE Yang, AS Gleinich, S Gangadhara, ...
PLoS pathogens 18 (5), e1010488, 2022
22022
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