Gaussian dynamics of folded proteins T Haliloglu, I Bahar, B Erman Physical review letters 79 (16), 3090, 1997 | 921 | 1997 |
HingeProt: automated prediction of hinges in protein structures U Emekli, D Schneidman‐Duhovny, HJ Wolfson, R Nussinov, T Haliloglu Proteins: Structure, Function, and Bioinformatics 70 (4), 1219-1227, 2008 | 262 | 2008 |
Dynamic allostery: linkers are not merely flexible B Ma, CJ Tsai, T Haliloğlu, R Nussinov Structure 19 (7), 907-917, 2011 | 241 | 2011 |
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 157 | 2011 |
Adaptability of protein structures to enable functional interactions and evolutionary implications T Haliloglu, I Bahar Current opinion in structural biology 35, 17-23, 2015 | 123 | 2015 |
Structure‐based analysis of protein dynamics: comparison of theoretical results for hen lysozyme with X‐ray diffraction and NMR relaxation data T Haliloglu, I Bahar Proteins: Structure, Function, and Bioinformatics 37 (4), 654-667, 1999 | 121 | 1999 |
Emergence and transmission of arbovirus evolutionary intermediates with epidemic potential KA Stapleford, LL Coffey, S Lay, AV Bordería, V Duong, O Isakov, ... Cell host & microbe 15 (6), 706-716, 2014 | 120 | 2014 |
Mechanisms of the exchange of diblock copolymers between micelles at dynamic equilibrium T Haliloǧlu, I Bahar, B Erman, WL Mattice Macromolecules 29 (13), 4764-4771, 1996 | 118 | 1996 |
Extreme entropy–enthalpy compensation in a drug-resistant variant of HIV-1 protease NM King, M Prabu-Jeyabalan, RM Bandaranayake, MNL Nalam, ... ACS chemical biology 7 (9), 1536-1546, 2012 | 99 | 2012 |
Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations I Bahar, B Erman, T Haliloglu, RL Jernigan Biochemistry 36 (44), 13512-13523, 1997 | 94 | 1997 |
Dynamics of preferential substrate recognition in HIV-1 protease: redefining the substrate envelope A Özen, T Haliloğlu, CA Schiffer Journal of molecular biology 410 (4), 726-744, 2011 | 89 | 2011 |
How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues T Haliloglu, O Keskin, B Ma, R Nussinov Biophysical Journal 88 (3), 1552-1559, 2005 | 86 | 2005 |
MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues C Kaya, A Armutlulu, S Ekesan, T Haliloglu Nucleic acids research 41 (W1), W249-W255, 2013 | 76 | 2013 |
Molecular dynamics simulations on constraint metal binding peptides N Kantarci, C Tamerler, M Sarikaya, T Haliloglu, P Doruker Polymer 46 (12), 4307-4313, 2005 | 73 | 2005 |
Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes N Kantarci-Carsibasi, T Haliloglu, P Doruker Biophysical journal 95 (12), 5862-5873, 2008 | 68 | 2008 |
Cooperative fluctuations of unliganded and substrate‐bound HIV‐1 protease: a structure‐based analysis on a variety of conformations from crystallography and molecular dynamics … N Kurt, WRP Scott, CA Schiffer, T Haliloglu Proteins: Structure, Function, and Bioinformatics 51 (3), 409-422, 2003 | 68 | 2003 |
Coarse‐grained simulations of conformational dynamics of proteins: Application to apomyoglobin T Haliloglu, I Bahar Proteins: Structure, Function, and Bioinformatics 31 (3), 271-281, 1998 | 63 | 1998 |
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues P Ozbek, S Soner, B Erman, T Haliloglu Nucleic acids research 38 (suppl_2), W417-W423, 2010 | 62 | 2010 |
Structural and dynamics aspects of ASC speck assembly AC Sahillioglu, F Sumbul, N Ozoren, T Haliloglu Structure 22 (12), 1722-1734, 2014 | 60 | 2014 |
Cα-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications M Schushan, Y Barkan, T Haliloglu, N Ben-Tal Proceedings of the National Academy of Sciences 107 (24), 10908-10913, 2010 | 59 | 2010 |