| The khmer software package: enabling efficient nucleotide sequence analysis MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... F1000Research 4, 2015 | 372* | 2015 |
| TraitCapture: genomic and environment modelling of plant phenomic data TB Brown, R Cheng, XRR Sirault, T Rungrat, KD Murray, M Trtilek, ... Current opinion in plant biology 18, 73-79, 2014 | 136 | 2014 |
| Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis PA Crisp, DR Ganguly, AB Smith, KD Murray, GM Estavillo, I Searle, ... The Plant Cell 29 (8), 1836-1863, 2017 | 107 | 2017 |
| Axe: rapid, competitive sequence read demultiplexing using a trie KD Murray, JO Borevitz Bioinformatics 34 (22), 3924-3925, 2018 | 59 | 2018 |
| A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation CI Cazzonelli, N Nisar, AC Roberts, KD Murray, JO Borevitz, BJ Pogson Frontiers in plant science 5, 104280, 2014 | 59 | 2014 |
| kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity KD Murray, C Webers, CS Ong, J Borevitz, N Warthmann PLoS computational biology 13 (9), e1005727, 2017 | 56 | 2017 |
| Identification and qualification of 500 nuclear, single‐copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture LC Teasdale, F Köhler, KD Murray, T O'Hara, A Moussalli Molecular ecology resources 16 (5), 1107-1123, 2016 | 44 | 2016 |
| Landscape drivers of genomic diversity and divergence in woodland Eucalyptus KD Murray, JK Janes, A Jones, HM Bothwell, RL Andrew, JO Borevitz Molecular ecology 28 (24), 5232-5247, 2019 | 34 | 2019 |
| RNA polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling PA Crisp, AB Smith, DR Ganguly, KD Murray, SR Eichten, AA Millar, ... Plant physiology 178 (4), 1614-1630, 2018 | 23 | 2018 |
| Global diversity of the Brachypodium species complex as a resource for genome-wide association studies demonstrated for agronomic traits in response to climate PB Wilson, JC Streich, KD Murray, SR Eichten, R Cheng, NC Aitken, ... Genetics 211 (1), 317-331, 2019 | 21* | 2019 |
| Regarding the F‐word: The effects of data filtering on inferred genotype‐environment associations CW Ahrens, R Jordan, J Bragg, PA Harrison, T Hopley, H Bothwell, ... Molecular Ecology Resources 21 (5), 1460-1474, 2021 | 19 | 2021 |
| Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus S Ferguson, A Jones, K Murray, B Schwessinger, JO Borevitz Molecular Ecology 32 (6), 1271-1287, 2023 | 11 | 2023 |
| Reply to: Re-evaluating evidence for adaptive mutation rate variation JG Monroe, KD Murray, W Xian, T Srikant, P Carbonell-Bejerano, ... Nature 619 (7971), E57-E60, 2023 | 8* | 2023 |
| Genomic constraints to drought adaptation CW Ahrens, K Murray, RA Mazanec, S Ferguson, J Bragg, A Jones, ... bioRxiv, 2021.08. 07.455511, 2021 | 6 | 2021 |
| khmer release v2. 1: software for biological sequence analysis D Standage, A Aliyari, LJ Cohen, MR Crusoe, T Head, L Irber, SEK Joslin, ... Journal of Open Source Software 2 (15), 272, 2017 | 4 | 2017 |
| libqcpp: a C++ 14 sequence quality control library. KD Murray, JO Borevitz J. Open Source Softw. 2 (13), 232, 2017 | 4 | 2017 |
| Acanthophis: a comprehensive plant hologenomics pipeline KD Murray, JO Borevitz, D Weigel, N Warthmann Journal of Open Source Software 9 (95), 6062, 2024 | | 2024 |
| Core genes driving climate adaptation in plants S Yeaman, J Whiting, T Booker, C Rougeux, B Lind, P Singh, M Lu, ... | | 2023 |
| Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System L Teasdale, G Shirsekar, M Collenberg, K Murray, A Contreras-Garrido, ... | | 2023 |
| Challenges of annotating complex genes in the Arabidopsis long read genome collection L Teasdale, G Shirsekar, M Collenberg, K Murray, A Contreras Garrido, ... | | 2023 |
Justin BorevitzResearch School of Biology, Australian National UniversityVerified email at anu.edu.au
