| Visualizing ’omic feature rankings and log-ratios using Qurro MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ... NAR Genomics and Bioinformatics 2 (2), lqaa023, 2020 | 125* | 2020 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome Biology 20 (1), 1-14, 2019 | 55 | 2019 |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, ... mSystems 6 (2), 2021 | 36 | 2021 |
| Nutrition and the Gut Microbiota in 10-to 18-Month-Old Children Living in Urban Slums of Mumbai, India SL Huey, L Jiang, MW Fedarko, D McDonald, C Martino, F Ali, DG Russell, ... mSphere 5 (5), 2020 | 31 | 2020 |
| MetaCarvel: linking assembly graph motifs to biological variants J Ghurye, T Treangen, M Fedarko, WJ Hervey, M Pop Genome Biology 20 (1), 1-14, 2019 | 23 | 2019 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 10 | 2018 |
| MetagenomeScope: Web-Based Hierarchical Visualization of Metagenome Assembly Graphs M Fedarko, J Ghurye, T Treangen, M Pop 25th International Symposium on Graph Drawing and Network Visualization …, 2017 | 5 | 2017 |
| Analyzing rare mutations in metagenomes assembled using long and accurate reads MW Fedarko, M Kolmogorov, PA Pevzner Genome Research 32 (11-12), 2119-2133, 2022 | 2 | 2022 |
| Hierarchically Visualizing Metagenome Assembly Graphs with MetagenomeScope M Fedarko, J Ghurye, T Treangen, M Pop University of Maryland, 2018 | 1 | 2018 |
| Analysis and assembly methods for microbiome sequencing data MW Fedarko University of California San Diego, 2021 | | 2021 |
