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Farzin Sohraby
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Performing an in silico repurposing of existing drugs by combining virtual screening and molecular dynamics simulation
F Sohraby, M Bagheri, H Aryapour
Computational Methods for Drug Repurposing, 23-43, 2019
392019
Rational drug repurposing for cancer by inclusion of the unbiased molecular dynamics simulation in the structure-based virtual screening approach: Challenges and breakthroughs
F Sohraby, H Aryapour
Seminars in Cancer Biology 68, 249-257, 2021
192021
Advances in computational methods for ligand binding kinetics
F Sohraby, A Nunes-Alves
Trends in Biochemical Sciences 48 (5), 437-449, 2023
182023
In silico drug repurposing of FDA-approved drugs to predict new inhibitors for drug resistant T315I mutant and wild-type BCR-ABL1: a virtual screening and molecular dynamics study
F Sohraby, M Bagheri, M Aliyar, H Aryapour
Journal of Molecular Graphics and Modelling 74, 234-240, 2017
172017
A boosted unbiased molecular dynamics method for predicting ligands binding mechanisms: Probing the binding pathway of dasatinib to Src-kinase
F Sohraby, MJ Moghadam, M Aliyar, H Aryapour
Bioinformatics, 2020
122020
Computational methods for drug repurposing
F Sohraby, M Bagheri, H Aryapour
Springer, 2019
122019
Repurposing existing drugs for new AMPK activators as a strategy to extend lifespan: a computer-aided drug discovery study
S Mofidifar, F Sohraby, M Bagheri, H Aryapour
Biogerontology 19, 133-143, 2018
122018
Prediction of new chromene-based inhibitors of tubulin using structure-based virtual screening and molecular dynamics simulation methods
H Aryapour, M Dehdab, F Sohraby, A Bargahi
Computational biology and chemistry 71, 89-97, 2017
122017
Unraveling the unbinding pathways of SARS-CoV-2 Papain-like proteinase known inhibitors by Supervised Molecular Dynamics simulation
F Sohraby, H Aryapour
PLoS One 16 (5), e0251910, 2021
112021
Application of Molecular Dynamics in Coating Ag-Conjugated Nanoparticles with Potential Therapeutic Applications
MBBN F Sohraby, M Hadi Soltanabad, M Bagheri, M Bezi Javan, M Javaheri ...
Nano Biomedicine and Engineering 12 (1), 90-98, 2020
82020
In silico prediction of new inhibitors for the nucleotide pool sanitizing enzyme, MTH1, using drug repurposing
F Sohraby, M Bagheri, M Javaheri Moghadam, H Aryapour
Journal of Biomolecular Structure and Dynamics 36 (10), 2628-2636, 2018
62018
Complete reconstruction of dasatinib unbinding pathway from c-Src kinase by supervised molecular dynamics simulation method; assessing efficiency and trustworthiness of the method
F Sohraby, M Javaheri Moghadam, M Aliyar, H Aryapour
Journal of Biomolecular Structure and Dynamics 40 (23), 12535-12545, 2022
42022
Reconstruction of the binding pathway of an anti-HIV drug, Indinavir, in complex with the HTLV-1 protease using unaggregated unbiased molecular dynamics simulation
F Sohraby, H Aryapour
Computational Biology and Chemistry 96, 107616, 2022
32022
Comparative analysis of the unbinding pathways of antiviral drug Indinavir from HIV and HTLV1 proteases by supervised molecular dynamics simulation
F Sohraby, H Aryapour
Plos one 16 (9), e0257916, 2021
32021
Characterization of the bottlenecks and pathways for inhibitor dissociation from [NiFe] hydrogenase
F Sohraby, AN Alves
2024
pH-dependence of the Plasmodium falciparum chloroquine resistance transporter is linked to the transport cycle
F Berger, GM Gomez, CP Sanchez, B Posch, G Planelles, F Sohraby, ...
Nature Communications 14 (1), 4234, 2023
2023
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