| A repository of assays to quantify 10,000 human proteins by SWATH-MS G Rosenberger, CC Koh, T Guo, HL Röst, P Kouvonen, BC Collins, ... Scientific data 1 (1), 1-15, 2014 | 431 | 2014 |
| Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ... Nature methods 14 (9), 921-927, 2017 | 209 | 2017 |
| Complex‐centric proteome profiling by SEC‐SWATH‐MS M Heusel, I Bludau, G Rosenberger, R Hafen, M Frank, ... Molecular systems biology 15 (1), e8438, 2019 | 137 | 2019 |
| Engineering of formate dehydrogenase: synergistic effect of mutations affecting cofactor specificity and chemical stability K Hoelsch, I Sührer, M Heusel, D Weuster-Botz Applied microbiology and biotechnology 97, 2473-2481, 2013 | 111 | 2013 |
| Structural basis of M3 muscarinic receptor dimer/oligomer formation SM McMillin, M Heusel, T Liu, S Costanzi, J Wess Journal of Biological Chemistry 286 (32), 28584-28598, 2011 | 73 | 2011 |
| The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification PY Helleboid, M Heusel, J Duc, C Piot, CW Thorball, A Coluccio, J Pontis, ... The EMBO journal 38 (18), e101220, 2019 | 72 | 2019 |
| A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS M Heusel, M Frank, M Köhler, S Amon, F Frommelt, G Rosenberger, ... Cell systems 10 (2), 133-155. e6, 2020 | 65 | 2020 |
| Systematic detection of functional proteoform groups from bottom-up proteomic datasets I Bludau, M Frank, C Dörig, Y Cai, M Heusel, G Rosenberger, P Picotti, ... Nature communications 12 (1), 3810, 2021 | 57 | 2021 |
| SWATH2stats: an R/bioconductor package to process and convert quantitative SWATH-MS proteomics data for downstream analysis tools P Blattmann, M Heusel, R Aebersold PloS one 11 (4), e0153160, 2016 | 48 | 2016 |
| Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes I Bludau, M Heusel, M Frank, G Rosenberger, R Hafen, ... Nature protocols, 1-47, 2020 | 42 | 2020 |
| PCprophet: a framework for protein complex prediction and differential analysis using proteomic data A Fossati, C Li, F Uliana, F Wendt, F Frommelt, P Sykacek, M Heusel, ... Nature methods 18 (5), 520-527, 2021 | 36 | 2021 |
| Precise temporal profiling of signaling complexes in primary cells using SWATH mass spectrometry E Caron, R Roncagalli, T Hase, WE Wolski, M Choi, MG Menoita, ... Cell reports 18 (13), 3219-3226, 2017 | 30 | 2017 |
| SECAT: quantifying protein complex dynamics across cell states by network-centric analysis of SEC-SWATH-MS profiles G Rosenberger, M Heusel, I Bludau, BC Collins, C Martelli, EG Williams, ... Cell systems 11 (6), 589-607. e8, 2020 | 24 | 2020 |
| Small-molecule-mediated OGG1 inhibition attenuates pulmonary inflammation and lung fibrosis in a murine lung fibrosis model L Tanner, AB Single, RKV Bhongir, M Heusel, T Mohanty, CAQ Karlsson, ... Nature communications 14 (1), 643, 2023 | 21 | 2023 |
| MSLibrarian: optimized predicted spectral libraries for data-independent acquisition proteomics M Isaksson, C Karlsson, T Laurell, A Kirkeby, M Heusel Journal of Proteome Research 21 (2), 535-546, 2022 | 10 | 2022 |
| Rapid profiling of protein complex reorganization in perturbed systems I Bludau, C Nicod, C Martelli, P Xue, M Heusel, A Fossati, F Uliana, ... Journal of Proteome Research 22 (5), 1520-1536, 2023 | 6 | 2023 |
| Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics C Gueto-Tettay, D Tang, L Happonen, M Heusel, H Khakzad, ... PLoS Computational Biology 19 (1), e1010457, 2023 | 5 | 2023 |
| DIP-MS: A novel ultra-deep interaction proteomics for the deconvolution of protein complexes F Frommelt, A Fossati, F Uliana, F Wendt, X Peng, M Heusel, ... bioRxiv, 2023.03. 22.533843, 2023 | 1 | 2023 |
| Systematic protein complex profiling and differential analysis from co-fractionation mass spectrometry data A Fossati, C Li, P Sykacek, M Heusel, F Frommelt, F Uliana, M Hallal, ... bioRxiv, 2020.05. 06.080465, 2020 | 1 | 2020 |
| Complex-centric proteome profiling by SEC-SWATH-MS I Bludau, M Heusel, G Rosenberger, R Hafen, M Frank, ... MOLECULAR & CELLULAR PROTEOMICS 18 (8), S15-S15, 2019 | 1 | 2019 |
