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Jorge Ruiz-Orera
Jorge Ruiz-Orera
MDC, Postdoctoral Researcher
Verified email at mdc-berlin.de - Homepage
Title
Cited by
Cited by
Year
Long non-coding RNAs as a source of new peptides
J Ruiz-Orera, X Messeguer, JA Subirana, MM Alba
elife 3, e03523, 2014
5072014
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17, 1-19, 2016
1652016
Origins of De Novo Genes in Human and Chimpanzee
J Ruiz-Orera, J Hernandez-Rodriguez, C Chiva, E Sabidó, I Kondova, ...
PLoS genetics 11 (12), e1005721, 2015
1462015
Translation of neutrally evolving peptides provides a basis for de novo gene evolution
J Ruiz-Orera, P Verdaguer-Grau, JL Villanueva-Cañas, X Messeguer, ...
Nature ecology & evolution 2 (5), 890-896, 2018
1202018
Standardized annotation of translated open reading frames
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ...
Nature biotechnology 40 (7), 994-999, 2022
942022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
D Reichart, EL Lindberg, H Maatz, AMA Miranda, A Viveiros, N Shvetsov, ...
Science 377 (6606), eabo1984, 2022
852022
Translation of small open reading frames: roles in regulation and evolutionary innovation
J Ruiz-Orera, MM Albà
Trends in Genetics 35 (3), 186-198, 2019
842019
Uncovering de novo gene birth in yeast using deep transcriptomics
WR Blevins, J Ruiz-Orera, X Messeguer, B Blasco-Moreno, ...
Nature communications 12 (1), 604, 2021
642021
New genes and functional innovation in mammals
JL Villanueva-Canas, J Ruiz-Orera, MI Agea, M Gallo, D Andreu, MM Albà
Genome biology and evolution 9 (7), 1886-1900, 2017
602017
Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p. Arg14del mutation
F Cuello, AE Knaust, U Saleem, M Loos, J Raabe, D Mosqueira, S Laufer, ...
EMBO molecular medicine 13 (6), e13074, 2021
412021
Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome
M Reixachs-Solé, J Ruiz-Orera, MM Albà, E Eyras
Nature communications 11 (1), 1768, 2020
382020
Evolution of new proteins from translated sORFs in long non-coding RNAs
J Ruiz-Orera, JL Villanueva-Cañas, MM Albà
Experimental cell research 391 (1), 111940, 2020
372020
Conserved regions in long non-coding RNAs contain abundant translation and protein–RNA interaction signatures
J Ruiz-Orera, MM Albà
NAR Genomics and Bioinformatics 1 (1), e2-e2, 2019
362019
Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames
CL Sandmann, JF Schulz, J Ruiz-Orera, M Kirchner, M Ziehm, E Adami, ...
Molecular cell 83 (6), 994-1011. e18, 2023
312023
Impact of uORFs in mediating regulation of translation in stress conditions
SG Moro, C Hermans, J Ruiz-Orera, MM Albà
BMC Molecular and Cell Biology 22, 1-13, 2021
242021
Multifunctional RNA-binding proteins influence mRNA abundance and translational efficiency of distinct sets of target genes
V Schneider-Lunitz, J Ruiz-Orera, N Hubner, S van Heesch
PLoS Computational Biology 17 (12), e1009658, 2021
232021
Evolution and implications of de novo genes in humans
LA Broeils, J Ruiz-Orera, B Snel, N Hubner, S van Heesch
Nature ecology & evolution 7 (6), 804-815, 2023
222023
TUNAR lncRNA encodes a microprotein that regulates neural differentiation and neurite formation by modulating calcium dynamics
E Senís, M Esgleas, S Najas, V Jiménez-Sábado, C Bertani, ...
Frontiers in Cell and Developmental Biology 9, 747667, 2021
212021
A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, JM Gonzalez, ...
BioRxiv, 2021.06. 10.447896, 2021
182021
pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation
O Boix, M Martinez, S Vidal, M Giménez-Alejandre, L Palenzuela, ...
Nature communications 13 (1), 6840, 2022
162022
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