| DisCovER: distance‐and orientation‐based covariational threading for weakly homologous proteins S Bhattacharya, R Roche, B Moussad, D Bhattacharya Proteins: Structure, Function, and Bioinformatics 90 (2), 579-588, 2022 | 13 | 2022 |
| Recent advances in protein homology detection propelled by inter-residue interaction map threading S Bhattacharya, R Roche, MH Shuvo, D Bhattacharya Frontiers in Molecular Biosciences 8, 643752, 2021 | 12 | 2021 |
| Hybridized distance-and contact-based hierarchical structure modeling for folding soluble and membrane proteins R Roche, S Bhattacharya, D Bhattacharya PLOS Computational Biology 17 (2), e1008753, 2021 | 8 | 2021 |
| The transformative power of transformers in protein structure prediction B Moussad, R Roche, D Bhattacharya Proceedings of the National Academy of Sciences 120 (32), e2303499120, 2023 | 5 | 2023 |
| E (3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction R Roche, B Moussad, MH Shuvo, D Bhattacharya PLoS Computational Biology 19 (8), e1011435, 2023 | 3 | 2023 |
| PolyFold: An interactive visual simulator for distance-based protein folding AJ McGehee, S Bhattacharya, R Roche, D Bhattacharya Plos one 15 (12), e0243331, 2020 | 2 | 2020 |
| EquiPNAS: improved protein–nucleic acid binding site prediction using protein-language-model-informed equivariant deep graph neural networks R Roche, B Moussad, MH Shuvo, S Tarafder, D Bhattacharya Nucleic Acids Research 52 (5), e27-e27, 2024 | 1 | 2024 |
| Contact-Assisted Threading in Low-Homology Protein Modeling S Bhattacharya, R Roche, MH Shuvo, B Moussad, D Bhattacharya Homology Modeling: Methods and Protocols, 41-59, 2023 | 1 | 2023 |
| PIQLE: protein–protein interface quality estimation by deep graph learning of multimeric interaction geometries MH Shuvo, M Karim, R Roche, D Bhattacharya Bioinformatics Advances 3 (1), vbad070, 2023 | 1 | 2023 |
| rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation R Roche, S Bhattacharya, MH Shuvo, D Bhattacharya Proteins: Structure, Function, and Bioinformatics 90 (12), 2023-2034, 2022 | | 2022 |
| Accurate self-assessment in 2D: protein contact map quality estimation by deep evolutionary reconciliation R Roche, S Bhattacharya, MH Shuvo, D Bhattacharya bioRxiv, 2022.01. 20.477079, 2022 | | 2022 |
| Hybridized distance-and contact-based hierarchical protein structure modeling using DConStruct R Roche, S Bhattacharya, D Bhattacharya Proceedings of the 12th ACM Conference on Bioinformatics, Computational …, 2021 | | 2021 |
