Riboswitches in eubacteria sense the second messenger cyclic di-GMP N Sudarsan, ER Lee, Z Weinberg, RH Moy, JN Kim, KH Link, RR Breaker Science 321 (5887), 411-413, 2008 | 872 | 2008 |
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ... PLoS biology 4 (9), e286, 2006 | 869 | 2006 |
A glycine-dependent riboswitch that uses cooperative binding to control gene expression M Mandal, M Lee, JE Barrick, Z Weinberg, GM Emilsson, WL Ruzzo, ... Science 306 (5694), 275-279, 2004 | 650 | 2004 |
Rfam 14: expanded coverage of metagenomic, viral and microRNA families I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ... Nucleic Acids Research 49 (D1), D192-D200, 2021 | 604 | 2021 |
Widespread genetic switches and toxicity resistance proteins for fluoride JL Baker, N Sudarsan, Z Weinberg, A Roth, RB Stockbridge, RR Breaker Science 335 (6065), 233-235, 2012 | 489 | 2012 |
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes Z Weinberg, JX Wang, J Bogue, J Yang, K Corbino, RH Moy, RR Breaker Genome biology 11, 1-17, 2010 | 444 | 2010 |
An allosteric self-splicing ribozyme triggered by a bacterial second messenger ER Lee, JL Baker, Z Weinberg, N Sudarsan, RR Breaker science 329 (5993), 845-848, 2010 | 437 | 2010 |
CMfinder—a covariance model based RNA motif finding algorithm Z Yao, Z Weinberg, WL Ruzzo Bioinformatics 22 (4), 445-452, 2006 | 431 | 2006 |
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ... Nucleic acids research 35 (14), 4809-4819, 2007 | 406 | 2007 |
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter JE Barrick, N Sudarsan, Z Weinberg, WL Ruzzo, RR Breaker Rna 11 (5), 774-784, 2005 | 303 | 2005 |
Riboswitches in eubacteria sense the second messenger c-di-AMP JW Nelson, N Sudarsan, K Furukawa, Z Weinberg, JX Wang, RR Breaker Nature chemical biology 9 (12), 834-839, 2013 | 298 | 2013 |
A widespread self-cleaving ribozyme class is revealed by bioinformatics A Roth, Z Weinberg, AGY Chen, PB Kim, TD Ames, RR Breaker Nature chemical biology 10 (1), 56-60, 2014 | 289 | 2014 |
R2R-software to speed the depiction of aesthetic consensus RNA secondary structures Z Weinberg, RR Breaker BMC bioinformatics 12, 1-9, 2011 | 271 | 2011 |
New classes of self-cleaving ribozymes revealed by comparative genomics analysis Z Weinberg, PB Kim, TH Chen, S Li, KA Harris, CE Lünse, RR Breaker Nature chemical biology 11 (8), 606-610, 2015 | 215 | 2015 |
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism EE Regulski, RH Moy, Z Weinberg, JE Barrick, Z Yao, WL Ruzzo, ... Molecular microbiology 68 (4), 918-932, 2008 | 190 | 2008 |
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 182 | 2021 |
Identification of hammerhead ribozymes in all domains of life reveals novel structural variations J Perreault, Z Weinberg, A Roth, O Popescu, P Chartrand, G Ferbeyre, ... PLoS computational biology 7 (5), e1002031, 2011 | 181 | 2011 |
Bacterial riboswitches cooperatively bind Ni2+ or Co2+ ions and control expression of heavy metal transporters K Furukawa, A Ramesh, Z Zhou, Z Weinberg, T Vallery, WC Winkler, ... Molecular cell 57 (6), 1088-1098, 2015 | 175 | 2015 |
Fluoride resistance and transport by riboswitch-controlled CLC antiporters RB Stockbridge, HH Lim, R Otten, C Williams, T Shane, Z Weinberg, ... Proceedings of the National Academy of Sciences 109 (38), 15289-15294, 2012 | 160 | 2012 |
Small, highly active DNAs that hydrolyze DNA H Gu, K Furukawa, Z Weinberg, DF Berenson, RR Breaker Journal of the American Chemical Society 135 (24), 9121-9129, 2013 | 159 | 2013 |