Structure-aware transformer for graph representation learning D Chen, L O’Bray, K Borgwardt International Conference on Machine Learning, 3469-3489, 2022 | 231 | 2022 |
Graphit: Encoding graph structure in transformers G Mialon, D Chen, M Selosse, J Mairal arXiv preprint arXiv:2106.05667, 2021 | 135 | 2021 |
A kernel perspective for regularizing deep neural networks A Bietti, G Mialon, D Chen, J Mairal International Conference on Machine Learning, 664-674, 2019 | 83 | 2019 |
Convolutional kernel networks for graph-structured data D Chen, L Jacob, J Mairal International Conference on Machine Learning, 1576-1586, 2020 | 62 | 2020 |
A trainable optimal transport embedding for feature aggregation and its relationship to attention G Mialon, D Chen, A d'Aspremont, J Mairal arXiv preprint arXiv:2006.12065, 2020 | 62 | 2020 |
Metamixup: Learning adaptive interpolation policy of mixup with metalearning Z Mai, G Hu, D Chen, F Shen, HT Shen IEEE transactions on neural networks and learning systems 33 (7), 3050-3064, 2021 | 39 | 2021 |
Biological sequence modeling with convolutional kernel networks D Chen, L Jacob, J Mairal Bioinformatics 35 (18), 3294-3302, 2019 | 34* | 2019 |
Recurrent kernel networks D Chen, L Jacob, J Mairal Advances in Neural Information Processing Systems 32, 2019 | 23 | 2019 |
ProteinShake: building datasets and benchmarks for deep learning on protein structures T Kucera, C Oliver, D Chen, K Borgwardt Advances in Neural Information Processing Systems 36, 2024 | 7 | 2024 |
Predicting in vitro single-neuron firing rates upon pharmacological perturbation using Graph Neural Networks T Kim, D Chen, P Hornauer, V Emmenegger, J Bartram, S Ronchi, ... Frontiers in Neuroinformatics 16, 1032538, 2023 | 5 | 2023 |
Approximate network motif mining via graph learning C Oliver, D Chen, V Mallet, P Philippopoulos, K Borgwardt arXiv preprint arXiv:2206.01008, 2022 | 4 | 2022 |
Unsupervised manifold alignment with joint multidimensional scaling D Chen, B Fan, C Oliver, K Borgwardt arXiv preprint arXiv:2207.02968, 2022 | 3 | 2022 |
Endowing protein language models with structural knowledge D Chen, P Hartout, P Pellizzoni, C Oliver, K Borgwardt arXiv preprint arXiv:2401.14819, 2024 | 2 | 2024 |
Structured Data Modeling with Deep Kernel Machines and Applications in Computational Biology D Chen Université Grenoble Alpes [2020-....], 2020 | 1 | 2020 |
Biomarker identification by interpretable maximum mean discrepancy MF Adamer, SC Brüningk, D Chen, K Borgwardt Bioinformatics 40 (Supplement_1), i501-i510, 2024 | | 2024 |
Learning Long Range Dependencies on Graphs via Random Walks D Chen, TH Schulz, K Borgwardt arXiv preprint arXiv:2406.03386, 2024 | | 2024 |
Fisher information embedding for node and graph learning D Chen, P Pellizzoni, K Borgwardt International Conference on Machine Learning, 4839-4855, 2023 | | 2023 |
Scalable covariance-based connectivity inference for synchronous neuronal networks T Kim, D Chen, P Hornauer, SS Kumar, M Schröter, K Borgwardt, ... bioRxiv, 2023.06. 17.545399, 2023 | | 2023 |
Unsupervised Manifold Alignment with Joint Multidimensional Scaling. arXiv. doi: 10.48550 D Chen, B Fan, C Oliver, K Borgwardt arXiv preprint arXiv.2207.02968, 2022 | | 2022 |
Modélisation de données structurées avec des machines profondes à noyaux et des applications en biologie computationnelle D Chen Université Grenoble Alpes, 2020 | | 2020 |