| Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022 | 147 | 2022 |
| Finding the number of latent topics with semantic non-negative matrix factorization R Vangara, M Bhattarai, E Skau, G Chennupati, H Djidjev, T Tierney, ... IEEE Access 9, 117217-117231, 2021 | 26 | 2021 |
| Electrolyte solution structure and its effect on the properties of electric double layers with surface charge regulation R Vangara, DCR Brown, F van Swol, DN Petsev Journal of Colloid and Interface Science 488, 180-189, 2017 | 26 | 2017 |
| Distributed non-negative matrix factorization with determination of the number of latent features G Chennupati, R Vangara, E Skau, H Djidjev, B Alexandrov The Journal of Supercomputing 76, 7458-7488, 2020 | 22 | 2020 |
| A neural network for determination of latent dimensionality in non-negative matrix factorization BT Nebgen, R Vangara, MA Hombrados-Herrera, S Kuksova, ... Machine Learning: Science and Technology 2 (2), 025012, 2021 | 19 | 2021 |
| Ionic solvation and solvent-solvent interaction effects on the charge and potential distributions in electric double layers R Vangara, F van Swol, DN Petsev The Journal of Chemical Physics 147 (21), 2017 | 19 | 2017 |
| Semantic nonnegative matrix factorization with automatic model determination for topic modeling R Vangara, E Skau, G Chennupati, H Djidjev, T Tierney, JP Smith, ... 2020 19th IEEE International Conference on Machine Learning and Applications …, 2020 | 15 | 2020 |
| Distributed non-negative tensor train decomposition M Bhattarai, G Chennupati, E Skau, R Vangara, H Djidjev, BS Alexandrov 2020 IEEE High Performance Extreme Computing Conference (HPEC), 1-10, 2020 | 15 | 2020 |
| Solvophilic and solvophobic surfaces and non-Coulombic surface interactions in charge regulating electric double layers R Vangara, F van Swol, DN Petsev The Journal of Chemical Physics 148 (4), 2018 | 13 | 2018 |
| Non-negative matrix factorization for selection of near-native protein tertiary structures N Akhter, R Vangara, G Chennupati, BS Alexandrov, H Djidjev, A Shehu 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 12 | 2019 |
| pydnmfk: Python distributed non negative matrix factorization M Bhattarai, B Nebgen, E Skau, M Eren, G Chennupati, R Vangara, ... GitHub. DOI: https://doi. org/10.5281/zenodo 4722448, 2021 | 9 | 2021 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment M Díaz-Gay, R Vangara, M Barnes, X Wang, SMA Islam, I Vermes, S Duke, ... Bioinformatics 39 (12), btad756, 2023 | 8 | 2023 |
| Identification of anomalous diffusion sources by unsupervised learning R Vangara, KØ Rasmussen, DN Petsev, G Bel, BS Alexandrov Physical Review Research 2 (2), 023248, 2020 | 8 | 2020 |
| Improved protein decoy selection via non-negative matrix factorization N Akhter, KL Kabir, G Chennupati, R Vangara, BS Alexandrov, H Djidjev, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3 …, 2021 | 6 | 2021 |
| Decoy selection in protein structure determination via symmetric non-negative matrix factorization KL Kabir, G Chennupati, R Vangara, H Djidjev, BS Alexandrov, A Shehu 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 6 | 2020 |
| Coulombic and non-Coulombic effects in charge-regulating electric double layers R Vangara, K Stoltzfus, MR York, F van Swol, DN Petsev Materials Research Express 6 (8), 086331, 2019 | 6 | 2019 |
| Classical density functional analysis of the ionic size effects on the properties of charge regulating electric double layers DJ Prakash, L Denoyer, R Vangara, JM Baca, F van Swol, DN Petsev Molecular Physics 119 (19-20), e1937737, 2021 | 5 | 2021 |
| Nonnegative tensor-train low-rank approximations of the Smoluchowski coagulation equation G Manzini, E Skau, DP Truong, R Vangara International Conference on Large-Scale Scientific Computing, 342-350, 2021 | 5 | 2021 |
| Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator A Khandekar, R Vangara, M Barnes, M Díaz-Gay, A Abbasi, ... BMC genomics 24 (1), 469, 2023 | 4 | 2023 |
| Geographic variation of mutagenic exposures in kidney cancer genomes S Senkin, S Moody, M Díaz-Gay, B Abedi-Ardekani, T Cattiaux, ... medRxiv, 2023.06. 20.23291538, 2023 | 3 | 2023 |
Boian S. AlexandrovTheoretical Division, Los Alamos National LabVerified email at lanl.gov
