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Ilya Vorontsov
Ilya Vorontsov
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Title
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Cited by
Year
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
16902014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
7272018
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic acids research 41 (D1), D195-D202, 2013
2852013
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, bav067, 2015
2802015
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2512016
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
1322020
Jaccard index based similarity measure to compare transcription factor binding site models
IE Vorontsov, IV Kulakovskiy, VJ Makeev
Algorithms for Molecular Biology 8, 1-11, 2013
802013
From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites
I Kulakovskiy, V Levitsky, D Oshchepkov, L Bryzgalov, I Vorontsov, ...
Journal of bioinformatics and computational biology 11 (01), 1340004, 2013
782013
Landscape of allele-specific transcription factor binding in the human genome
S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ...
Nature communications 12 (1), 2751, 2021
652021
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ...
Genome biology 21, 1-18, 2020
452020
PERFECTOS-APE-predicting regulatory functional effect of SNPs by approximate P-value estimation
IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev
International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2015
362015
Multiple single nucleotide polymorphisms in the first intron of the IL2RA gene affect transcription factor binding and enhancer activity
AM Schwartz, DE Demin, IE Vorontsov, AS Kasyanov, LV Putlyaeva, ...
Gene 602, 50-56, 2017
322017
Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells
AM Schwartz, LV Putlyaeva, M Covich, AV Klepikova, KA Akulich, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016
262016
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data
IE Vorontsov, AD Fedorova, IS Yevshin, RN Sharipov, FA Kolpakov, ...
BMC research notes 11, 1-3, 2018
242018
Negative selection maintains transcription factor binding motifs in human cancer
IE Vorontsov, G Khimulya, EN Lukianova, DD Nikolaeva, IA Eliseeva, ...
BMC genomics 17, 263-276, 2016
202016
In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response
I Eliseeva, I Vorontsov, K Babeyev, S Buyanova, M Sysoeva, ...
Translation 1 (2), 18-24, 2013
152013
The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region
MA Afanasyeva, LV Putlyaeva, DE Demin, IV Kulakovskiy, IE Vorontsov, ...
PLoS One 12 (2), e0172681, 2017
132017
EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes
D Marakulina, IE Vorontsov, IV Kulakovskiy, A Lennartsson, F Drabløs, ...
Nucleic Acids Research 51 (D1), D564-D570, 2023
92023
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs
A Boytsov, S Abramov, AZ Aiusheeva, AM Kasianova, E Baulin, ...
Nucleic Acids Research 50 (W1), W51-W56, 2022
72022
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
IE Vorontsov, IA Eliseeva, A Zinkevich, M Nikonov, S Abramov, A Boytsov, ...
Nucleic Acids Research 52 (D1), D154-D163, 2024
62024
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