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Allison (Alli) Black
Allison (Alli) Black
Department of Epidemiology, University of Washington
Verified email at uw.edu
Title
Cited by
Cited by
Year
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
Nature protocols 12 (6), 1261-1276, 2017
10172017
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406-410, 2017
6212017
Developmental regulation of Th17‐cell capacity in human neonates
A Black, S Bhaumik, RL Kirkman, CT Weaver, DA Randolph
European journal of immunology 42 (2), 311-319, 2012
942012
Ebola virus transmission initiated by relapse of systemic Ebola virus disease
P Mbala-Kingebeni, C Pratt, M Mutafali-Ruffin, MG Pauthner, F Bile, ...
New England Journal of Medicine 384 (13), 1240-1247, 2021
782021
Ten recommendations for supporting open pathogen genomic analysis in public health
A Black, DR MacCannell, TR Sibley, T Bedford
Nature medicine 26 (6), 832-841, 2020
732020
Integration of genomic sequencing into the response to the Ebola virus outbreak in Nord Kivu, Democratic Republic of the Congo
E Kinganda-Lusamaki, A Black, DB Mukadi, J Hadfield, ...
Nature medicine 27 (4), 710-716, 2021
362021
dms-view: Interactive visualization tool for deep mutational scanning data
SK Hilton, J Huddleston, A Black, K North, AS Dingens, T Bedford, ...
Journal of open source software 5 (52), 2020
332020
Massive iatrogenic outbreak of human immunodeficiency virus type 1 in rural Cambodia, 2014–2015
F Rouet, J Nouhin, DP Zheng, B Roche, A Black, S Prak, M Leoz, ...
Clinical Infectious Diseases 66 (11), 1733-1741, 2018
262018
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
A Black, LH Moncla, K Laiton-Donato, B Potter, L Pardo, A Rico, C Tovar, ...
BMC infectious diseases 19, 1-11, 2019
242019
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
Gigascience 11, giac003, 2022
222022
Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus
A Black, R Breyta, T Bedford, G Kurath
Virus Evolution 2 (2), vew034, 2016
202016
Successful mitigation of viral disease based on a delayed exposure rearing strategy at a large-scale steelhead trout conservation hatchery
R Breyta, C Samson, M Blair, A Black, G Kurath
Aquaculture 450, 213-224, 2016
152016
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State
LH Moncla, A Black, C DeBolt, M Lang, NR Graff, AC Pérez-Osorio, ...
Elife 10, e66448, 2021
142021
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, N Alikhan, D Fornika, F Maguire, ...
142020
Spatial and temporal heterogeneity of infectious hematopoietic necrosis virus in Pacific Northwest salmonids
R Breyta, A Black, J Kaufman, G Kurath
Infection, Genetics and Evolution 45, 347-358, 2016
122016
Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California
G Stoddard, A Black, P Ayscue, D Lu, J Kamm, K Bhatt, L Chan, AL Kistler, ...
BMC Public Health 22 (1), 456, 2022
92022
Trends in maternal outcomes during the COVID-19 pandemic in Alabama from 2016 to 2021
VV Shukla, AKMF Rahman, X Shen, A Black, A Nakhmani, ...
JAMA Network Open 5 (4), e222681-e222681, 2022
62022
Infection clusters can elevate risk of diagnostic target failure for detection of SARS-CoV-2
D Lopez, J Roberts, M Bourgeois, J Kootstra, S Minnick, A Black, J Mauss, ...
PLoS One 17 (2), e0264008, 2022
52022
Genetic characterization of the Zika virus epidemic in the US Virgin Islands
A Black, B Potter, G Dudas, L Feldstein, ND Grubaugh, KG Andersen, ...
bioRxiv, 113100, 2017
52017
Trends in fetal and neonatal outcomes during the COVID-19 pandemic in Alabama
VV Shukla, AKMF Rahman, X Shen, A Black, N Arora, CV Lal, EF Bell, ...
Pediatric research 94 (2), 756-761, 2023
42023
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Articles 1–20