| A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria CJ Meehan, RG Beiko Genome Biology and Evolution 6 (3), 703-713, 2014 | 704 | 2014 |
| Microbial shifts in the aging mouse gut MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, ... Microbiome 2, 1-12, 2014 | 396 | 2014 |
| Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ... NATURE reviews microbiology 17 (9), 533-545, 2019 | 322 | 2019 |
| Interactions in the microbiome: communities of organisms and communities of genes E Boon*, CJ Meehan*, C Whidden, DHJ Wong, MGI Langille, RG Beiko, ... FEMS microbiology reviews 38 (1), 90-118, 2014 | 229 | 2014 |
| Genomic characterization of Nontuberculous Mycobacteria T Fedrizzi*, CJ Meehan*, A Grottola, E Giacobazzi, GF Serpini, ... Scientific Reports 7, 2017 | 228 | 2017 |
| Unexpected high prevalence of resistance-associated Rv0678 variants in MDR-TB patients without documented prior use of clofazimine or bedaquiline C Villellas, N Coeck, CJ Meehan, N Lounis, B de Jong, L Rigouts, ... Journal of Antimicrobial Chemotherapy 72 (3), 684-690, 2017 | 186 | 2017 |
| A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region JCS Ngabonziza, C Loiseau, M Marceau, A Jouet, F Menardo, O Tzfadia, ... Nature communications 11 (1), 2917, 2020 | 174 | 2020 |
| The new phylogeny of the genus Mycobacterium: the old and the news E Tortoli*, T Fedrizzi*, CJ Meehan*, A Trovato, A Grottola, E Giacobazzi, ... Infection, Genetics and Evolution 56, 19-25, 2017 | 153 | 2017 |
| Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression F Dumetz, H Imamura, M Sanders, V Seblova, J Myskova, P Pescher, ... MBio 8 (3), 10.1128/mbio. 00599-17, 2017 | 152 | 2017 |
| GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions MR Farhat, L Freschi, R Calderon, T Ioerger, M Snyder, CJ Meehan, ... Nature communications 10 (1), 2128, 2019 | 138 | 2019 |
| Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history M Coscolla, S Gagneux, F Menardo, C Loiseau, P Ruiz-Rodriguez, ... Microbial genomics 7 (2), 000477, 2021 | 127 | 2021 |
| The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... EBioMedicine 37, 410-416, 2018 | 122 | 2018 |
| Isoniazid resistance levels of Mycobacterium tuberculosis can largely be predicted by high-confidence resistance-conferring mutations P Lempens, CJ Meehan, K Vandelannoote, K Fissette, P de Rijk, ... Scientific reports 8 (1), 3246, 2018 | 119 | 2018 |
| Specific gyrA gene mutations predict poor treatment outcome in MDR-TB L Rigouts, N Coeck, M Gumusboga, WB De Rijk, KJM Aung, MA Hossain, ... Journal of Antimicrobial Chemotherapy 71 (2), 314-323, 2016 | 102 | 2016 |
| The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia MI Gröschel, CJ Meehan, I Barilar, M Diricks, A Gonzaga, M Steglich, ... Nature communications 11 (1), 2044, 2020 | 90 | 2020 |
| The evolution of the class A scavenger receptors FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DM E Bowdish BMC evolutionary biology 12, 1-11, 2012 | 74 | 2012 |
| Diagnosis of bacterial bloodstream infections: a 16S metagenomics approach S Decuypere*, CJ Meehan*, S Van Puyvelde, T De Block, J Maltha, ... PLoS Negl Trop Dis 10 (2), e0004470, 2016 | 60 | 2016 |
| Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium E Tortoli, CJ Meehan, A Grottola, GF Serpini, A Fabio, A Trovato, ... Infection, Genetics and Evolution 75, 103983, 2019 | 56 | 2019 |
| Characterization of genomic variants associated with resistance to bedaquiline and delamanid in naive Mycobacterium tuberculosis clinical strains S Battaglia, A Spitaleri, AM Cabibbe, CJ Meehan, C Utpatel, N Ismail, ... Journal of clinical microbiology 58 (11), 10.1128/jcm. 01304-20, 2020 | 54 | 2020 |
| Whole genome sequencing to complement tuberculosis drug resistance surveys in Uganda W Ssengooba, CJ Meehan, D Lukoye, GW Kasule, K Musisi, ML Joloba, ... Infection, Genetics and Evolution 40, 8-16, 2016 | 51 | 2016 |
Bouke de JongHead Mycobacteriology Unit, Institute of Tropical MedicineVerified email at itg.be
