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José Cleydson F. Silva
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Revision of Begomovirus taxonomy based on pairwise sequence comparisons
JK Brown, FM Zerbini, J Navas-Castillo, E Moriones, R Ramos-Sobrinho, ...
Archives of virology 160, 1593-1619, 2015
7992015
The diversification of begomovirus populations is predominantly driven by mutational dynamics
ATM Lima, JCF Silva, FN Silva, GP Castillo-Urquiza, FF Silva, YM Seah, ...
Virus evolution 3 (1), vex005, 2017
912017
Machine learning approaches and their current application in plant molecular biology: A systematic review
JCF Silva, RM Teixeira, FF Silva, SH Brommonschenkel, EPB Fontes
Plant Science 284, 37-47, 2019
732019
The stress-induced soybean NAC transcription factor GmNAC81 plays a positive role in developmentally programmed leaf senescence
MR Pimenta, PA Silva, GC Mendes, JR Alves, HDN Caetano, ...
Plant and Cell physiology 57 (5), 1098-1114, 2016
482016
Functional and regulatory conservation of the soybean ER stress-induced DCD/NRP-mediated cell death signaling in plants
PAB Reis, PA Carpinetti, PPJ Freitas, EGD Santos, LF Camargos, ...
BMC plant biology 16 (1), 1-19, 2016
472016
Revisiting the soybean GmNAC superfamily
BP Melo, OT Fraga, JCF Silva, DO Ferreira, OJB Brustolini, PA Carpinetti, ...
Frontiers in plant science 9, 1864, 2018
422018
A novel, highly divergent ssDNA virus identified in Brazil infecting apple, pear and grapevine
MF Basso, JCF da Silva, TVM Fajardo, EPB Fontes, FM Zerbini
Virus research 210, 27-33, 2015
402015
Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
MF Santana, JCF Silva, ESG Mizubuti, EF Araújo, BJ Condon, ...
BMC genomics 15 (1), 1-14, 2014
342014
The molecular chaperone binding protein BiP prevents leaf dehydration-induced cellular homeostasis disruption
HH Carvalho, OJB Brustolini, MR Pimenta, GC Mendes, BC Gouveia, ...
PLoS One 9 (1), e86661, 2014
342014
A Begomovirus Nuclear Shuttle Protein-Interacting Immune Hub: Hijacking Host Transport Activities and Suppressing Incompatible Functions
LGC Martins, GAS Raimundo, NGA Ribeiro, JCF Silva, NC Euclydes, ...
Frontiers in Plant Science 11, 398, 2020
332020
Comparative genomics of Staphylococcus aureus associated with subclinical and clinical bovine mastitis
LS Rocha, DM Silva, MP Silva, PMP Vidigal, JCF Silva, ST Guerra, ...
PloS one 14 (8), e0220804, 2019
302019
Geminivirus data warehouse: a database enriched with machine learning approaches
JCF Silva, TFM Carvalho, MF Basso, M Deguchi, WA Pereira, ...
BMC bioinformatics 18, 1-11, 2017
292017
Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis
MF Santana, JCF Silva, AD Batista, LE Ribeiro, GF da Silva, EF de Araújo, ...
BMC genomics 13 (1), 1-11, 2012
292012
Proteomic and metabolomic analysis of a drought tolerant soybean cultivar from Brazilian savanna
LL Lima, BP Balbi, RO Mesquita, JCF da Silva, FS Coutinho, FMS Carmo, ...
Crop Breeding, Genetics and Genomics 1 (2), 2019
252019
The Hemileia vastatrix effector HvEC‐016 suppresses bacterial blight symptoms in coffee genotypes with the SH1 rust resistance gene
T Maia, JL Badel, G Marin‐Ramirez, CM Rocha, MB Fernandes, ...
New Phytologist 213 (3), 1315-1329, 2017
242017
Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome: conserved and plant-specific features
PA Silva, JCF Silva, HDN Caetano, JPB Machado, GC Mendes, PAB Reis, ...
BMC genomics 16, 1-20, 2015
242015
Genetic variability and population structure of the New World begomovirus Euphorbia yellow mosaic virus
TB Mar, CAD Xavier, ATM Lima, AM Nogueira, JCF Silva, ...
Journal of General Virology 98 (6), 1537-1551, 2017
202017
Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae
JCF Silva, TFM Carvalho, EPB Fontes, FR Cerqueira
BMC bioinformatics 18, 1-14, 2017
192017
Evolutionary dynamics of bipartite begomoviruses revealed by complete genome analysis
CAD Xavier, MT Godinho, TB Mar, CG Ferro, OFL Sande, JC Silva, ...
Molecular Ecology 30 (15), 3747-3767, 2021
172021
Development and cell death domain-containing asparagine-rich protein (DCD/NRP): An essential protein in plant development and stress responses
LF de Camargos, OT Fraga, CC Oliveira, JCF da Silva, EPB Fontes, ...
Theoretical and Experimental Plant Physiology 31, 59-70, 2019
162019
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Articles 1–20