| Disparities in second‐generation DNA metabarcoding results exposed with accessible and repeatable workflows TJ Divoll, VA Brown, J Kinne, GF McCracken, JM O'Keefe Molecular ecology resources 18 (3), 590-601, 2018 | 40 | 2018 |
| Pseudorandom generators, typically-correct derandomization, and circuit lower bounds J Kinne, D Van Melkebeek, R Shaltiel Computational complexity 21, 3-61, 2012 | 40 | 2012 |
| Dichotomy for digraph homomorphism problems A Rafiey, J Kinne, T Feder CoRR, abs/1701.02409, 2017 | 25 | 2017 |
| Pseudorandom generators and typically-correct derandomization J Kinne, D van Melkebeek, R Shaltiel International Workshop on Approximation Algorithms for Combinatorial …, 2009 | 18 | 2009 |
| Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data Y Bai, J Kinne, B Donham, F Jiang, L Ding, JR Hassler, RJ Kaufman BMC genomics 17, 107-117, 2016 | 11 | 2016 |
| On derandomization and average-case complexity of monotone functions G Karakostas, J Kinne, D van Melkebeek Theoretical Computer Science 434, 35-44, 2012 | 7 | 2012 |
| Space hierarchy results for randomized and other semantic models J Kinne, D van Melkebeek Computational Complexity 19, 423-475, 2010 | 7 | 2010 |
| Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly Y Bai, J Kinne, L Ding, EC Rath, A Cox, SD Naidu BMC bioinformatics 18, 37-48, 2017 | 6 | 2017 |
| On TC0 Lower Bounds for the Permanent J Kinne Computing and Combinatorics: 18th Annual International Conference, COCOON …, 2012 | 5 | 2012 |
| Space hierarchy results for randomized models J Kinne, D Van Melkebeek 25th International Symposium on Theoretical Aspects of Computer Science, 2008 | 4 | 2008 |
| Dichotomy for digraph homomorphism problems T Feder, J Kinne, A Murali, A Rafiey arXiv preprint arXiv:1701.02409, 2017 | 3 | 2017 |
| Ordering with precedence constraints and budget minimization A Rafiey, J Kinne, J Manuch, A Rafiey arXiv preprint arXiv:1507.04885, 2015 | 3 | 2015 |
| Ordering with precedence constraints and budget minimization J Kinne, J Manuch, A Rafiey, A Rafiey CoRR, abs/1507.04885, 2015 | 3 | 2015 |
| Lower Bounds Against Weakly-Uniform Threshold Circuits R Chen, V Kabanets, J Kinne Algorithmica 70, 47-75, 2014 | 2 | 2014 |
| Digraphs Homomorphism Problems with Maltsev Condition J Kinne, A Murali, A Rafiey arXiv preprint arXiv:2008.09921, 2020 | 1 | 2020 |
| Pro-SMP finder–A systematic approach for discovering small membrane proteins in prokaryotes T Hoffman, J Kinne, KH Cho Plos one 19 (2), e0299169, 2024 | | 2024 |
| Vertex Ordering with Precedence Constraints J Kinne, A Rafiey, A Rafiey, M Sorkhpar International Symposium on Fundamentals of Computation Theory, 304-317, 2023 | | 2023 |
| MetaPlex: An Ion Torrent COI metabarcoding workflow and toolkit to increase experimental efficacy and efficiency N Gabry, J Kinne, R Gonser Authorea Preprints, 2022 | | 2022 |
| Digraph homomorphism problem and weak near unanimity polymorphism T Feder, J Kinne, A Murali, A Rafiey arXiv preprint arXiv:2009.13090, 2020 | | 2020 |
| Uncovering Small Transmembrane Peptides in Bacteria T Hoffman, J Kinne, KH Cho Nucleic Acids Research 48 (3), 2020 | | 2020 |
