| Phylotranscriptomic analysis of the origin and early diversification of land plants NJ Wickett, S Mirarab, N Nguyen, T Warnow, E Carpenter, N Matasci, ... Proceedings of the National Academy of Sciences 111 (45), E4859-E4868, 2014 | 669 | 2014 |
| Data access for the 1,000 Plants (1KP) project N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ... Gigascience 3 (1), 2047-217X-3-17, 2014 | 324 | 2014 |
| PASTA: ultra-large multiple sequence alignment for nucleotide and amino-acid sequences S Mirarab, N Nguyen, S Guo, LS Wang, J Kim, T Warnow Journal of Computational Biology 22 (5), 377-386, 2015 | 147 | 2015 |
| A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity NP Nguyen, T Warnow, M Pop, B White NPJ biofilms and microbiomes 2, 16004, 2016 | 98 | 2016 |
| MRL and SuperFine+ MRL: new supertree methods N Nguyen, S Mirarab, T Warnow Algorithms for Molecular Biology 7 (1), 3, 2012 | 97 | 2012 |
| iBioSim: a tool for the analysis and design of genetic circuits CJ Myers, N Barker, K Jones, H Kuwahara, C Madsen, NPD Nguyen Bioinformatics 25 (21), 2848-2849, 2009 | 90 | 2009 |
| SEPP: SATé-enabled phylogenetic placement S Mirarab, N Nguyen, T Warnow Biocomputing 2012, 247-258, 2012 | 58 | 2012 |
| Ultra-large alignments using phylogeny-aware profiles DN Nam-phuong, S Mirarab, K Kumar, T Warnow Genome biology 16 (1), 124, 2015 | 53 | 2015 |
| PASTA: ultra-large multiple sequence alignment S Mirarab, N Nguyen, T Warnow International Conference on Research in Computational Molecular Biology, 177-191, 2014 | 45 | 2014 |
| TIPP: taxonomic identification and phylogenetic profiling N Nguyen, S Mirarab, B Liu, M Pop, T Warnow Bioinformatics 30 (24), 3548-3555, 2014 | 43 | 2014 |
| The design of a genetic muller c-element NPD Nguyen, H Kuwahara, CJ Myers, JP Keener 13th IEEE International Symposium on Asynchronous Circuits and Systems …, 2007 | 30 | 2007 |
| Phylogenomics from whole genome sequences using aTRAM JM Allen, B Boyd, NP Nguyen, P Vachaspati, T Warnow, DI Huang, ... Systematic biology 66 (5), 786-798, 2017 | 25 | 2017 |
| Modelling amorphous computations with transcription networks ZB Simpson, TL Tsai, N Nguyen, X Chen, AD Ellington Journal of The Royal Society Interface 6 (suppl_4), S523-S533, 2009 | 23 | 2009 |
| Design and analysis of a robust genetic Muller C-element N Nguyen, C Myers, H Kuwahara, C Winstead, J Keener Journal of theoretical biology 264 (2), 174-187, 2010 | 18 | 2010 |
| Primates, lice and bacteria: speciation and genome evolution in the symbionts of hominid lice BM Boyd, JM Allen, NP Nguyen, P Vachaspati, ZS Quicksall, T Warnow, ... Molecular biology and evolution 34 (7), 1743-1757, 2017 | 11 | 2017 |
| Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola) BM Boyd, JM Allen, NP Nguyen, AD Sweet, T Warnow, MD Shapiro, ... Systematic biology 66 (6), 896-911, 2017 | 11 | 2017 |
| Genetic design automation CJ Myers, N Barker, H Kuwahara, K Jones, C Madsen, NPD Nguyen Proceedings of the 2009 International Conference on Computer-Aided Design …, 2009 | 10 | 2009 |
| Global phylogeography and ancient evolution of the widespread human gut virus crAssphage R Edwards, A Vega, H Norman, MC Ohaeri, K Levi, E Dinsdale, O Cinek, ... bioRxiv, 527796, 2019 | 9 | 2019 |
| High diversity of picornaviruses in rats from different continents revealed by deep sequencing TA Hansen, S Mollerup, N Nguyen, NE White, M Coghlan, ... Emerging microbes & infections 5 (1), 1-8, 2016 | 8 | 2016 |
| Design and analysis of genetic circuits N Nguyen, H Kuwahara, C Myers, J Keener Master's thesis, University of Utah, 2008 | 8 | 2008 |
Tandy WarnowFounder Professor of Computer Science, UIUCVerified email at illinois.edu
