| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1726 | 2014 |
| An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017 | 1016 | 2017 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 763 | 2018 |
| An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 561 | 2017 |
| Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC genomics 15, 1-12, 2014 | 292 | 2014 |
| EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015 | 291 | 2015 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic acids research 41 (D1), D195-D202, 2013 | 286 | 2013 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 255 | 2016 |
| Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS computational biology 8 (5), e1002529, 2012 | 194 | 2012 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 140 | 2020 |
| RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ... Nature Communications 11 (1), 1018, 2020 | 126 | 2020 |
| Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to marine and freshwater conditions AV Artemov, NS Mugue, SM Rastorguev, S Zhenilo, AM Mazur, ... Molecular biology and evolution 34 (9), 2203-2213, 2017 | 117 | 2017 |
| Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016 | 107 | 2016 |
| Intergenic, gene terminal, and intragenic CpG islands in the human genome YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ... BMC genomics 11, 1-16, 2010 | 107 | 2010 |
| Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes T Alam, YA Medvedeva, H Jia, JB Brown, L Lipovich, VB Bajic PloS one 9 (10), e109443, 2014 | 90 | 2014 |
| Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera AM Khamis, AR Hamilton, YA Medvedeva, T Alam, I Alam, M Essack, ... Scientific reports 5 (1), 11136, 2015 | 55 | 2015 |
| Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools IV Antonov, E Mazurov, M Borodovsky, YA Medvedeva Briefings in bioinformatics 20 (2), 551-564, 2019 | 53 | 2019 |
| CpG traffic lights are markers of regulatory regions in human genome AV Lioznova, AM Khamis, AV Artemov, E Besedina, V Ramensky, ... BMC genomics 20, 1-12, 2019 | 42 | 2019 |
| Regional differences in gene expression and promoter usage in aged human brains LM Pardo, P Rizzu, M Francescatto, M Vitezic, GGR Leday, JS Sanchez, ... Neurobiology of aging 34 (7), 1825-1836, 2013 | 42 | 2013 |
| A novel method for improved accuracy of transcription factor binding site prediction AM Khamis, O Motwalli, R Oliva, BR Jankovic, YA Medvedeva, H Ashoor, ... Nucleic acids research 46 (12), e72-e72, 2018 | 41 | 2018 |
Vsevolod MakeevCancer Research UK, ManchesterVerified email at manchester.ac.uk
