Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic CW Nelson, Z Ardern, TL Goldberg, C Meng, CH Kuo, C Ludwig, ... Elife 9, e59633, 2020 | 102 | 2020 |
Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution I Jungreis, CW Nelson, Z Ardern, Y Finkel, NJ Krogan, K Sato, J Ziebuhr, ... Virology 558, 145-151, 2021 | 50 | 2021 |
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome SM Hücker, Z Ardern, T Goldberg, A Schafferhans, M Bernhofer, ... PloS one 12 (9), e0184119, 2017 | 30 | 2017 |
Are antisense proteins in prokaryotes functional? Z Ardern, K Neuhaus, S Scherer Frontiers in molecular biosciences 7, 187, 2020 | 24 | 2020 |
OLGenie: estimating natural selection to predict functional overlapping genes CW Nelson, Z Ardern, X Wei Molecular Biology and Evolution 37 (8), 2440-2449, 2020 | 24 | 2020 |
Optimality in the standard genetic code is robust with respect to comparison code sets S Wichmann, Z Ardern Biosystems 185, 104023, 2019 | 24 | 2019 |
The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase S Vanderhaeghen, B Zehentner, S Scherer, K Neuhaus, Z Ardern Scientific reports 8 (1), 17875, 2018 | 24 | 2018 |
Recommendations for bacterial ribosome profiling experiments based on bioinformatic evaluation of published data A Glaub, C Huptas, K Neuhaus, Z Ardern Journal of Biological Chemistry 295 (27), 8999-9011, 2020 | 23 | 2020 |
A novel pH-regulated, unusual 603 bp overlapping protein coding gene pop is encoded antisense to ompA in Escherichia coli O157: H7 (EHEC) B Zehentner, Z Ardern, M Kreitmeier, S Scherer, K Neuhaus Frontiers in microbiology 11, 471910, 2020 | 15 | 2020 |
Spotlight on alternative frame coding: Two long overlapping genes in Pseudomonas aeruginosa are translated and under purifying selection M Kreitmeier, Z Ardern, M Abele, C Ludwig, S Scherer, K Neuhaus Iscience 25 (2), 2022 | 12* | 2022 |
Evidence for Numerous Embedded Antisense Overlapping Genes in Diverse E. coli Strains B Zehentner, Z Ardern, M Kreitmeier, S Scherer, K Neuhaus bioRxiv, 2020.11. 18.388249, 2020 | 10 | 2020 |
Biological factors in the synthetic construction of overlapping genes S Wichmann, S Scherer, Z Ardern BMC genomics 22, 1-17, 2021 | 7* | 2021 |
Dysfunction, disease, and the limits of selection Z Ardern Biological Theory 13 (1), 4-9, 2018 | 6 | 2018 |
Elucidating the functional roles of prokaryotic proteins using big data and artificial intelligence Z Ardern, S Chakraborty, F Lenk, AK Kaster FEMS Microbiology Reviews 47 (1), fuad003, 2023 | 4 | 2023 |
Alternative reading frames are an underappreciated source of protein sequence novelty Z Ardern Journal of Molecular Evolution 91 (5), 570-580, 2023 | 3 | 2023 |
Small proteins: overcoming size restrictions Z Ardern Nature Reviews Microbiology 20 (2), 65-65, 2022 | 3 | 2022 |
Highly similar average collateral effect of synonymous mutations across alternative reading frames: a potential role in evolvability S Wichmann, Z Ardern BioCosmos 3 (1), 1-11, 2023 | 1* | 2023 |
THE CONTENTIOUS COMPATIBILITY OF EVOLUTION AND DESIGN: INTRODUCTION TO THE BOOK SYMPOSIUM: with Zachary Ardern,“The Contentious Compatibility of Evolution and Design … Z Ardern Zygon® 57 (4), 1019-1023, 2022 | 1 | 2022 |
SARS-CoV-2: don't ignore non-canonical genes Z Ardern, X Wei, WC Nelson | 1 | 2021 |
Investigating trade-offs in sexual populations with gene flow ZN Ardern, MR Goddard Evolutionary Biology: Biodiversification from Genotype to Phenotype, 245-262, 2015 | 1 | 2015 |