| A Zinc Finger Motif-Containing Protein Is Essential for Chloroplast RNA Editing T Sun, X Shi, G Friso, K Van Wijk, S Bentolila, MR Hanson PLoS Genet 11 (3), 2015 | 127 | 2015 |
| RNA recognition motif-containing protein ORRM4 broadly affects mitochondrial RNA editing and impacts plant development and flowering X Shi, A Germain, MR Hanson, S Bentolila Plant Physiology 170 (1), 294-309, 2016 | 74 | 2016 |
| Two RNA recognition motif-containing proteins are plant mitochondrial editing factors X Shi, S Bentolila, MR Hanson Nucleic Acids Research 43 (7), 3814-3825, 2015 | 71 | 2015 |
| Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ... Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018 | 58 | 2018 |
| DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng BMC bioinformatics 22, 1-18, 2021 | 53 | 2021 |
| An Organelle RNA Recognition Motif Protein Is Required for Photosystem II Subunit psbF Transcript Editing JB Hackett, X Shi, AT Kobylarz, MK Lucas, RL Wessendorf, KM Hines, ... Plant Physiology 173 (4), 2278-2293, 2017 | 51 | 2017 |
| Organelle RNA recognition motif-containing (ORRM) proteins are plastid and mitochondrial editing factors in Arabidopsis X Shi, S Bentolila, MR Hanson Plant Signaling & Behavior 11 (5), 294-309, 2016 | 47 | 2016 |
| Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ... Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021 | 35 | 2021 |
| ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing X Shi, B Castandet, A Germain, MR Hanson, S Bentolila Journal of Experimental Botany 68 (11), 2833-2847, 2017 | 35 | 2017 |
| Genomic imbalance determines positive and negative modulation of gene expression in diploid maize X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ... The Plant Cell 33 (4), 917-939, 2021 | 24 | 2021 |
| Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Cell 33 (4), 901-916, 2021 | 22 | 2021 |
| Protection against autoimmune diabetes by silkworm-produced GFP-tagged CTB-insulin fusion protein Q Meng, W Wang, X Shi, Y Jin, Y Zhang Journal of Immunology Research 2011, 2011 | 20 | 2011 |
| Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ... Journal of genetics and genomics 47 (2), 93-103, 2020 | 18 | 2020 |
| The gene balance hypothesis: epigenetics and dosage effects in plants X Shi, C Chen, H Yang, J Hou, T Ji, J Cheng, RA Veitia, JA Birchler Plant epigenetics and epigenomics: methods and protocols, 161-171, 2020 | 14 | 2020 |
| Interpretable attention model in transcription factor binding site prediction with deep neural networks C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng bioRxiv, 2019 | 13 | 2019 |
| Functional diversity of Arabidopsis organelle‐localized RNA‐recognition motif‐containing proteins X Shi, MR Hanson, S Bentolila Wiley Interdisciplinary Reviews: RNA 8 (5), e1420, 2017 | 13 | 2017 |
| Effect of aneuploidy of a non‐essential chromosome on gene expression in maize X Shi, H Yang, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Journal 110 (1), 193-211, 2022 | 9 | 2022 |
| MicroRNAs play regulatory roles in genomic balance X Shi, H Yang, JA Birchler BioEssays 45 (2), 2200187, 2023 | 8 | 2023 |
| GNET2: an R package for constructing gene regulatory networks from transcriptomic data C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng Bioinformatics 37 (14), 2068-2069, 2021 | 5 | 2021 |
| Genomic imbalance modulates transposable element expression in maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler Plant Communications 4 (2), 2023 | 2 | 2023 |
James A. BirchlerCurators' Professor of Biological Sciences, University of MissouriVerified email at missouri.edu
