| Illuminating protein space with a programmable generative model JB Ingraham, M Baranov, Z Costello, KW Barber, W Wang, A Ismail, ... Nature 623 (7989), 1070-1078, 2023 | 152 | 2023 |
| Pervasive Recombination and Sympatric Genome Diversification Driven by Frequency-Dependent Selection in Borrelia burgdorferi, the Lyme Disease Bacterium J Haven, LC Vargas, EF Mongodin, V Xue, Y Hernandez, P Pagan, ... Genetics 189 (3), 951-966, 2011 | 78 | 2011 |
| Peptide design by optimization on a data-parameterized protein interaction landscape JM Jenson, V Xue, L Stretz, T Mandal, LL Reich, AE Keating Proceedings of the National Academy of Sciences 115 (44), E10342-E10351, 2018 | 57 | 2018 |
| Identification of cancer related genes using a comprehensive map of human gene expression A Torrente, M Lukk, V Xue, H Parkinson, J Rung, A Brazma PloS one 11 (6), e0157484, 2016 | 42 | 2016 |
| Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia L Xie, C Ng, T Ali, R Valencia, BL Ferreira, V Xue, M Tanweer, D Zhou, ... BMC genomics 14, 1-12, 2013 | 7 | 2013 |
| MageComet—web application for harmonizing existing large-scale experiment descriptions V Xue, T Burdett, M Lukk, J Taylor, A Brazma, H Parkinson Bioinformatics 28 (10), 1402-1403, 2012 | 2 | 2012 |
| Antigen Binding Molecules Targeting SARS-CoV-2 G Grigoryan, J Ingraham, CL Leung, RS Federman, RJ Green, V Xue, ... US Patent App. 18/151,088, 2023 | | 2023 |
| Peptides selective for Bcl-2 family proteins V Xue, JM Jenson, AE Keating, J Zhou, G Grigoryan US Patent 11,286,299, 2022 | | 2022 |
| Peptide Design by Optimization on a High-Dimensional, Data-Parameterized Protein Interaction Landscape J Jenson, V Xue, L Stretz, L Reich, A Keating PROTEIN SCIENCE 27, 237-237, 2018 | | 2018 |
| Peptide design by optimization on a high-dimensional, data-parameterized protein interaction landscape V Xue Signature redacted, 99, 2018 | | 2018 |
| Modeling and designing Bc1-2 family protein interactions using high-throughput interaction data V Xue Massachusetts Institute of Technology, 2018 | | 2018 |
| Identification of cancer related genes using a comprehensive map of human gene expression EA Torrente Orihuela, M Lukk, V Xue, H Parkinson, J Rung, A Brazma PLOS, 2016 | | 2016 |
