| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 64 | 2016 |
| Inflammatory cytokines and mechanical injury induce post-traumatic osteoarthritis-like changes in a human cartilage-bone-synovium microphysiological system G Dwivedi, L Flaman, B Alaybeyoglu, A Struglics, EH Frank, ... Arthritis research & therapy 24 (1), 198, 2022 | 18 | 2022 |
| Response of Escherichia coli to Prolonged Berberine Exposure N Budeyri Gokgoz, FG Avci, KK Yoneten, B Alaybeyoglu, E Ozkirimli, ... Microbial Drug Resistance 23 (5), 531-544, 2017 | 18 | 2017 |
| pVEC hydrophobic N‐terminus is critical for antibacterial activity B Alaybeyoglu, B Sariyar Akbulut, E Ozkirimli Journal of Peptide Science 24 (6), e3083, 2018 | 16 | 2018 |
| A novel chimeric peptide with antimicrobial activity B Alaybeyoglu, B Sariyar Akbulut, E Ozkirimli Journal of Peptide Science 21 (4), 294-301, 2015 | 14 | 2015 |
| Assessment of drug-induced toxicity biomarkers in the brain microphysiological system (MPS) using targeted and untargeted molecular profiling SG Mina, B Alaybeyoglu, WL Murphy, JA Thomson, CL Stokes, M Cirit Frontiers in big Data 2, 23, 2019 | 12 | 2019 |
| Insights into membrane translocation of the cell-penetrating peptide pVEC from molecular dynamics calculations B Alaybeyoglu, B Sariyar Akbulut, E Ozkirimli Journal of Biomolecular Structure and Dynamics 34 (11), 2387-2398, 2016 | 11 | 2016 |
| The effect of a beta‐lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study B Alaybeyoglu, BG Uluocak, BS Akbulut, E Ozkirimli Journal of Peptide Science 23 (5), 374-383, 2017 | 10 | 2017 |
| Estimating drug potency in the competitive target mediated drug disposition (TMDD) system when the endogenous ligand is included. B Alaybeyoglu, HW Cheng, KA Doshi, V Makani, AM Stein Journal of Pharmacokinetics and Pharmacodynamics 48, 447-464, 2021 | 4 | 2021 |
| FlyOde-a platform for community curation and interactive visualization of dynamic gene regulatory networks in Drosophila eye development SA Koestler, B Alaybeyoglu, CX Weichenberger, A Celik F1000Research 4, 2015 | 3 | 2015 |
| Effects of Dexamethasone and IGF-1 on post-traumatic osteoarthritis-like catabolic changes in a human cartilage-bone-synovium microphysiological system in Space and Ground … G Dwivedi, L Flaman, B Alaybeyoglu, EH Frank, RM Black, J Fite, ... Frontiers in Space Technologies 5, 1358412, 2024 | | 2024 |
| Pathway-based similarity measurement to quantify transcriptomics similarity between human tissues and preclinical models. P Parekh, J Sherfey, B Alaybeyoglu, M Cirit bioRxiv, 2024.04. 13.589385, 2024 | | 2024 |
| Neurodegenerative target discovery platform M Cirit, B Alaybeyoglu, JS Sherfey, JW Rumsey, Y Shin US Patent App. 18/340,495, 2023 | | 2023 |
| Neurodegenerative target discovery platform M Cirit, B Alaybeyoglu, JS Sherfey, JW Rumsey, Y Shin US Patent 11,738,340, 2023 | | 2023 |
| Microfluidic platform for target and biomarker discovery for non-alcoholic fatty liver disease M Cirit, B Alaybeyoglu, NB Sorensen, JW Rumsey US Patent App. 17/104,708, 2021 | | 2021 |
| Live monitoring of bacterial peptide uptake using lab-on-a-chip technology B Alaybeyoglu, M Yuce, BS Akbulut, E Ozkirimli FEBS JOURNAL 284, 199-199, 2017 | | 2017 |
| Peptide drugs against antibiotic resistant bacteria B Alaybeyoğlu Thesis (Ph. D.)-Bogazici University. Institute for Graduate Studies in …, 2017 | | 2017 |
| Uptake Mechanism of the Cell-penetrating Peptide pVEC: How Does the Hydrophobic N-terminus Contribute? B Alaybeyoglu, A Duranel, E Ozkirimli PROTEIN SCIENCE 25, 121-122, 2016 | | 2016 |
| Jessica Polka1, Pamela Silver1 1Department of Systems Biology, Harvard Medical School, 2Wyss Institute for Biologically Inspired Engineering B Alaybeyoglu, A Duranel, E Ozkirimli Award Winners and Abstracts of the 30th Anniversary Symposium of The Protein …, 2016 | | 2016 |
| Analysis of Membrane Translocation Simulations using Dimensionality Reduction B Alaybeyoglu, E Ozkirimli Biophysical Journal 106 (2), 805a, 2014 | | 2014 |
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