| Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows E Denisenko, BB Guo, M Jones, R Hou, L De Kock, T Lassmann, D Poppe, ... Genome biology 21, 1-25, 2020 | 396 | 2020 |
| Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer SZ Wu, DL Roden, C Wang, H Holliday, K Harvey, AS Cazet, KJ Murphy, ... The EMBO Journal 39 (19), e104063, 2020 | 256 | 2020 |
| Sensitization to immune checkpoint blockade through activation of a STAT1/NK axis in the tumor microenvironment RM Zemek, E De Jong, WL Chin, IS Schuster, VS Fear, TH Casey, ... Science translational medicine 11 (501), 2019 | 182 | 2019 |
| Transcriptional signature in microglia associated with Aβ plaque phagocytosis A Grubman, XY Choo, G Chew, JF Ouyang, G Sun, NP Croft, FJ Rossello, ... Nature communications 12 (1), 1-22, 2021 | 160 | 2021 |
| Predicting cell-to-cell communication networks using NATMI R Hou, E Denisenko, HT Ong, JA Ramilowski, ARR Forrest Nature communications 11 (1), 1-11, 2020 | 147 | 2020 |
| scMatch: a single-cell gene expression profile annotation tool using reference datasets R Hou, E Denisenko, ARR Forrest Bioinformatics 35 (22), 4688-4695, 2019 | 88 | 2019 |
| Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution CA Herring, RK Simmons, S Freytag, D Poppe, JJD Moffet, J Pflueger, ... Cell 185 (23), 4428-4447. e28, 2022 | 55 | 2022 |
| Detection and prognostic role of heterogeneous populations of melanoma circulating tumour cells CA Aya-Bonilla, M Morici, X Hong, AC McEvoy, RJ Sullivan, J Freeman, ... British journal of cancer 122 (7), 1059-1067, 2020 | 49 | 2020 |
| Comprehensive evaluation of deconvolution methods for human brain gene expression GJ Sutton, D Poppe, RK Simmons, K Walsh, U Nawaz, R Lister, ... Nature Communications 13 (1), 1-18, 2022 | 42 | 2022 |
| Fine-tuning the tumour microenvironment: Current perspectives on the mechanisms of tumour immunosuppression JD Armitage, HV Newnes, A McDonnell, A Bosco, J Waithman Cells 10 (1), 56, 2021 | 20 | 2021 |
| Expression levels of therapeutic targets as indicators of sensitivity to targeted therapeutics R Roy, LN Winteringham, T Lassmann, ARR Forrest Molecular cancer therapeutics 18 (12), 2480-2489, 2019 | 18 | 2019 |
| The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution D Anderson, P Skut, AM Hughes, E Ferrari, J Tickner, J Xu, BH Mullin, ... Scientific reports 10 (1), 1-14, 2020 | 17 | 2020 |
| Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice RM Zemek, WL Chin, VS Fear, B Wylie, TH Casey, C Forbes, CM Tilsed, ... Nature communications 13 (1), 1-16, 2022 | 15 | 2022 |
| Intra-and inter-tumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing W Lin, AB Beasley, NM Ardakani, E Denisenko, L Calapre, M Jones, ... Molecular Case Studies, mcs. a006111, 2021 | 13 | 2021 |
| Evaluation of PD-L1 expression on circulating tumour cells in small-cell lung cancer E Acheampong, A Abed, M Morici, I Spencer, AB Beasley, S Bowyer, ... Translational Lung Cancer Research 11 (3), 440, 2022 | 12 | 2022 |
| Is the blood an alternative for programmed cell death ligand 1 assessment in non-small cell lung cancer? E Acheampong, I Spencer, W Lin, M Ziman, M Millward, E Gray Cancers 11 (7), 920, 2019 | 10 | 2019 |
| Characterization of the humanized FRG mouse model and development of an AAV-LK03 variant with improved liver lobular biodistribution. M Cabanes-Creus, RG Navarro, SHY Liao, S Scott, R Carlessi, ... Molecular Therapy-Methods & Clinical Development, 2023 | 7 | 2023 |
| Single-nucleus RNA sequencing of pre-malignant liver reveals disease-associated hepatocyte state with HCC prognostic potential R Carlessi, E Denisenko, E Boslem, J Köhn-Gaone, N Main, NDBA Bakar, ... Cell Genomics 3 (5), 2023 | 6 | 2023 |
| Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study VS Fear, CA Forbes, D Anderson, S Rauschert, G Syn, N Shaw, ME Jones, ... Gene 821, 146287, 2022 | 6 | 2022 |
| Therapeutic blockade of ER stress and inflammation prevents NASH and progression to HCC E Boslem, S Reibe, R Carlessi, B Smeuninx, S Tegegne, CL Egan, ... Science Advances 9 (37), eadh0831, 2023 | 5 | 2023 |
Alistair ForrestSystems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWAVerified email at perkins.uwa.edu.au
