| Large-scale Multi-omic Analysis of COVID-19 Severity KA Overmyer, E Shishkova, IJ Miller, J Balnis, MN Bernstein, ... Cell Systems 12 (1), 23-40, 2021 | 494 | 2021 |
| MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive MN Bernstein, AH Doan, CN Dewey Bioinformatics 33 (18), 2914-2923, 2017 | 92 | 2017 |
| CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology MN Bernstein, Z Ma, M Gleicher, CN Dewey iScience 24 (1), 101913, 2021 | 25 | 2021 |
| Generation of anti-GD2 CAR macrophages from human pluripotent stem cells for cancer immunotherapies J Zhang, S Webster, B Duffin, MN Bernstein, J Steill, S Swanson, ... Stem Cell Reports 18 (2), 585-596, 2023 | 16 | 2023 |
| Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation SP Simonett, S Shin, JA Herring, R Bacher, LA Smith, C Dong, ... The Journal of Clinical Investigation 131 (21), 2021 | 16 | 2021 |
| The Anna Karenina model of β cell maturation in development and their dedifferentiation in type 1 and type 2 diabetes SD Nimkulrat, MN Bernstein, Z Ni, J Brown, C Kendziorski, B Blum Diabetes 70 (9), 2058-2066, 2021 | 13 | 2021 |
| CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets MN Bernstein, Z Ni, M Collins, ME Burkard, C Kendziorski, R Stewart BMC Bioinformatics 22 (1), 1-9, 2021 | 12 | 2021 |
| Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive MN Bernstein, A Gladstein, KZ Latt, E Clough, B Busby, A Dillman F1000Research 9, 2020 | 9 | 2020 |
| SpatialCorr identifies gene sets with spatially varying correlation structure MN Bernstein, Z Ni, A Prasad, J Brown, C Mohanty, R Stewart, ... Cell Reports Methods 2 (12), 100369, 2022 | 7 | 2022 |
| Annotating cell types in human single-cell RNA-seq data with CellO MN Bernstein, CN Dewey STAR Protocols 2 (3), 100705, 2021 | 2 | 2021 |
| Monkeybread: A Python toolkit for the analysis of cellular niches in single-cell resolution spatial transcriptomics data MN Bernstein, D Scott, CC Hession, T Nieuwenhuis, J Gerritsen, S Tabrizi, ... bioRxiv, 2023.09. 14.557736, 2023 | | 2023 |
| Computational Methods for Transcriptome-based Cellular Phenotyping MN Bernstein University of Wisconsin - Madison, 2019 | | 2019 |
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonVerified email at biostat.wisc.edu
