Tyler S. Alioto

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Jessica Gomez GarridoCNAGVerified email at cnag.eu
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Fernando CruzCNAG-CRGVerified email at cnag.crg.eu
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Anna Esteve-CodinaCNAG-CRGVerified email at cnag.crg.eu
Ivo GutDirector, Centro Nacional de Analisis Genomico, CNAG-CRG, Center for Genomic RegulationVerified email at cnag.crg.eu
Marc DabadCNAGVerified email at cnag.eu
Tim HubbardHead Dept. Medical & Molecular Genetics, King's College London, Director of Bioinformatics, King'sVerified email at kcl.ac.uk
Marina Marcet-HoubenBarcelona Supercomputing Center - BSCVerified email at bsc.es
Paul BertoneBrown UniversityVerified email at brown.edu
Pär EngströmScience for Life Laboratory, Stockholm UniversityVerified email at scilifelab.se
Irene JulcaUniversity of Lausanne (UNIL)Verified email at unil.ch
Josep F Abril [ORCID: 0000-0001-779...Aggregate Professor; Dp Genetics, Microbiology & Statistics; Universitat de Barcelona (RoR021018s57)Verified email at ub.edu
Alberto Cuesta https://orcid.org/ 0000-...University of Murcia https://ror.org/03p3aeb86Verified email at um.es
Elena Chaves PozoInstituto Español de Oceanografía, CSICVerified email at ieo.es
Simon HeathSenior Team Leader, CNAG, Center Nacional de Análisis GenómicoVerified email at cnag.crg.es
Pablo Vargas (ORCID: 0000-0003-45...Real Jardín BotánicoVerified email at rjb.csic.es
Antonio FiguerasInstituto de Investigaciones Marinas. CSICVerified email at csic.es
Beatriz NovoaResearch Professor IIM-CSIC Vigo (Spain)Verified email at iim.csic.es
Alexandre ReymondDirector, Center for Integrative Genomics, University of Lausanne, SwitzerlandVerified email at unil.ch

Tyler S. Alioto

CNAG

Verified email at cnag.eu - Homepage

Bioinformatics gene prediction genome assembly


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Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5474	2012
The tomato genome sequence provides insights into fleshy fruit evolution xx Tomato Genome Consortium Nature 485 (7400), 635, 2012	3186	2012
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011	1442	2011
The genome sequence of taurine cattle: a window to ruminant biology and evolution Bovine Genome Sequencing and Analysis Consortium, CG Elsik, ... Science 324 (5926), 522-528, 2009	1147	2009
Genome Sequence of the Pea Aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLoS biology 8 (2), e1000313, 2010	977	2010
The genome of melon (Cucumis melo L.) J Garcia-Mas, A Benjak, W Sanseverino, M Bourgeois, G Mir, ... Proceedings of the National Academy of Sciences 109 (29), 11872-11877, 2012	767	2012
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	765	2013
Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013	588	2013
The genome sequence of taurine cattle: a window to ruminant biology and evolution TBG Sequencing, CG Elsik, RL Tellam, KC Worley, Analysis Consortium Science (New York, NY) 324 (5926), 522, 2009	399	2009
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ... Nature communications 6 (1), 1-13, 2015	321	2015
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ... Genome research 17 (6), 746-759, 2007	221	2007
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ... Genome biology 17, 1-18, 2016	219	2016
Genome sequence of the olive tree, Olea europaea F Cruz, I Julca, J Gómez-Garrido, D Loska, M Marcet-Houben, E Cano, ... Gigascience 5 (1), s13742-016-0134-5, 2016	211	2016
The odorant receptor repertoire of teleost fish TS Alioto, J Ngai BMC genomics 6, 1-14, 2005	195	2005
U12DB: a database of orthologous U12-type spliceosomal introns TS Alioto Nucleic acids research 35 (suppl_1), D110-D115, 2007	190	2007
Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life A Figueras, D Robledo, A Corvelo, M Hermida, P Pereiro, JA Rubiolo, ... DNA research 23 (3), 181-192, 2016	175	2016
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ... Genome biology 17, 1-19, 2016	167	2016
The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022	145	2022
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel M Gerdol, R Moreira, F Cruz, J Gómez-Garrido, A Vlasova, U Rosani, ... Genome biology 21, 1-21, 2020	129	2020
Identifying protein-coding genes in genomic sequences J Harrow, A Nagy, A Reymond, T Alioto, L Patthy, SE Antonarakis, ... Genome Biology 10, 1-8, 2009	118	2009

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