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Manu Shivakumar
Manu Shivakumar
Graduate Student at University of Pennsylvania
Verified email at pennmedicine.upenn.edu
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Cited by
Cited by
Year
Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations
CG Boer, K Hatzikotoulas, L Southam, L Stefánsdóttir, Y Zhang, ...
Cell 184 (18), 4784-4818. e17, 2021
2752021
Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer
M Shivakumar, Y Lee, L Bang, T Garg, KA Sohn, D Kim
BMC medical genomics 10, 65-75, 2017
632017
Min-redundancy and max-relevance multi-view feature selection for predicting ovarian cancer survival using multi-omics data
Y El-Manzalawy, TY Hsieh, M Shivakumar, D Kim, V Honavar
BMC medical genomics 11, 19-31, 2018
542018
Population-dependent intron retention and DNA methylation in breast cancer
D Kim, M Shivakumar, S Han, MS Sinclair, YJ Lee, Y Zheng, OI Olopade, ...
Molecular Cancer Research 16 (3), 461-469, 2018
302018
Development and validation of a novel strong prognostic index for colon cancer through a robust combination of laboratory features for systemic inflammation: a prognostic …
SH Jung, J Hao, M Shivakumar, Y Nam, J Kim, MJ Kim, SB Ryoo, ...
British journal of cancer 126 (11), 1539-1547, 2022
232022
The effects of alternative splicing on miRNA binding sites in bladder cancer
S Han, D Kim, M Shivakumar, YJ Lee, T Garg, JE Miller, JH Kim, D Kim, ...
PLoS One 13 (1), e0190708, 2018
212018
Exome-wide rare variant analysis from the DiscovEHR study identifies novel candidate predisposition genes for endometrial cancer
M Shivakumar, JE Miller, VR Dasari, R Gogoi, D Kim
Frontiers in Oncology 9, 574, 2019
202019
Polygenic risk for type 2 diabetes, lifestyle, metabolic health, and cardiovascular disease: a prospective UK Biobank study
JS Yun, SH Jung, M Shivakumar, B Xiao, AV Khera, HH Won, D Kim
Cardiovascular diabetology 21 (1), 131, 2022
182022
Long-term cardiovascular outcomes of gestational diabetes mellitus: a prospective UK Biobank study
SM Lee, M Shivakumar, JW Park, YM Jung, EK Choe, SH Kwak, S Oh, ...
Cardiovascular Diabetology 21 (1), 221, 2022
162022
Rare variants in the splicing regulatory elements of EXOC3L4 are associated with brain glucose metabolism in Alzheimer’s disease
JE Miller, MK Shivakumar, Y Lee, S Han, E Horgousluoglu, SL Risacher, ...
BMC medical genomics 11, 45-52, 2018
152018
Codon bias among synonymous rare variants is associated with Alzheimer’s disease imaging biomarker
JE Miller, MK Shivakumar, SL Risacher, AJ Saykin, S Lee, K Nho, D Kim, ...
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018
152018
An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer
JJ Oh, M Shivakumar, J Miller, S Verma, H Lee, SK Hong, SE Lee, Y Lee, ...
Scientific Reports 9 (1), 17173, 2019
102019
Increasing the density of laboratory measures for machine learning applications
V Abedi, J Li, MK Shivakumar, V Avula, DP Chaudhary, MJ Shellenberger, ...
Journal of Clinical Medicine 10 (1), 103, 2020
92020
Prognostic effect of inflammatory genes on Stage I–III colorectal cancer—Integrative analysis of TCGA data
EK Choe, S Lee, SY Kim, M Shivakumar, KJ Park, YJ Chai, D Kim
Cancers 13 (4), 751, 2021
82021
Dissecting the clinical relevance of polygenic risk score for obesity—a cross-sectional, longitudinal analysis
EK Choe, M Shivakumar, SM Lee, A Verma, D Kim
International Journal of Obesity 46 (9), 1686-1693, 2022
72022
Genome-Wide association analysis across 16,956 patients identifies a novel genetic association between BMP6, NIPAL1, CNGA1 and spondylosis
Y Zhang, RA Grant, MK Shivakumar, M Zaleski, N Sofoluke, JR Slotkin, ...
Spine 46 (11), E625-E631, 2021
72021
Quality control procedures for genome‐wide association studies
VQ Truong, JA Woerner, TA Cherlin, Y Bradford, AM Lucas, CC Okeh, ...
Current Protocols 2 (11), e603, 2022
52022
Epigenetic interplay between methylation and miRNA in bladder cancer: focus on isoform expression
M Shivakumar, S Han, Y Lee, D Kim
BMC genomics 22, 1-12, 2021
52021
A network-based analysis of disease complication associations for obstetric disorders in the UK biobank
V Sriram, Y Nam, M Shivakumar, A Verma, SH Jung, SM Lee, D Kim
Journal of Personalized Medicine 11 (12), 1382, 2021
42021
Multi-layered network-based pathway activity inference using directed random walks: application to predicting clinical outcomes in urologic cancer
SY Kim, EK Choe, M Shivakumar, D Kim, KA Sohn
Bioinformatics 37 (16), 2405-2413, 2021
42021
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