| The Sulu Zone, 1768-1898: The dynamics of external trade, slavery, and ethnicity in the transformation of a Southeast Asian maritime state JF Warren NUS press, 2007 | 898 | 2007 |
| Ah Ku and Karayuki-San JF Warren Prostitution in Singapore 1940, 1870 | 328 | 1870 |
| Rickshaw coolie: A people's history of Singapore, 1880-1940 JF Warren Nus Press, 2003 | 307 | 2003 |
| Iranun and Balangingi: Globalization, maritime raiding and the birth of ethnicity JF Warren NUS Press, 2002 | 203 | 2002 |
| The Sulu Zone: The world capitalist economy and the historical imagination JF Warren VU University Press, 1998 | 69* | 1998 |
| A tale of two centuries: the globalization of maritime raiding and piracy in Southeast Asia at the end of the eighteenth and twentieth centuries JF Warren A world of water, 123-152, 2007 | 64 | 2007 |
| At the Edge of Southeast Asian History: Essays JF Warren New Day Publishers, 1987 | 47 | 1987 |
| Pirates, prostitutes and pullers: Explorations in the ethno-and social history of Southeast Asia JF Warren UWA Press, 2008 | 42 | 2008 |
| Prostitution and the politics of venereal disease: Singapore, 1870–98 JF Warren Journal of Southeast Asian Studies 21 (2), 360-383, 1990 | 41 | 1990 |
| The North Borneo chartered company's administration of the Bajau 1878-1909 JF Warren Sabah Society Journal 5 (4), 288-351, 1972 | 36* | 1972 |
| The global economy and the Sulu zone: Connections, commodities, and culture JF Warren Sea Changes, 55-74, 2012 | 35 | 2012 |
| Slavery and the impact of external trade: The Sulu sultanate in the nineteenth century J Warren Pirates, Prostitutes and Pullers: Explorations in the Ethno-and Social …, 2008 | 27 | 2008 |
| Sino-Sulu trade in the late eighteenth and nineteenth centuries JF Warren Philippine Studies, 50-79, 1977 | 27 | 1977 |
| The Sulu zone revisited H Sutherland Journal of Southeast Asian Studies 35 (1), 133-157, 2004 | 25 | 2004 |
| Slave Markets and Exchange in the Malay World: The Sulu Sultanate, 1770–1878 JF Warren Journal of Southeast Asian Studies 8 (2), 162-175, 1977 | 25 | 1977 |
| Typhoons and the inequalities of Philippine society and history JF Warren Philippine Studies Historical & Ethnographic Viewpoints, 455-472, 2016 | 21 | 2016 |
| A tale of two decades: Typhoons and floods, Manila and the provinces, and the Marcos years JF Warren The Asia–Pacific Journal: Japan Focus 11 (43/3), 2013 | 20 | 2013 |
| Scientific Superman: Father José Algué, Jesuit Meteorology, and the Philippines under American Rule, 1897-1924 JF Warren Colonial Crucible: Empier in the Making of the Modern American State, 508-519, 2009 | 18 | 2009 |
| The structure of slavery in the Sulu zone in the late eighteenth and nineteenth centuries JF Warren Slavery and Abolition 24 (2), 111-128, 2003 | 18 | 2003 |
| Weather, history and empire: the typhoon factor and the manila galleon trade, 1565–1815 JF Warren Anthony Reid and the Study of Southeast Asian Past, Singapore: ISEAS Publishing, 2012 | 16 | 2012 |
