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Xiaotong Yao
Xiaotong Yao
Foundation Medicine
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Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1661*2020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
8472020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
5012020
SvABA: genome-wide detection of structural variants and indels by local assembly
JA Wala, P Bandopadhayay, NF Greenwald, R O'Rourke, T Sharpe, ...
Genome research 28 (4), 581-591, 2018
3312018
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
2892021
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
1672020
Integrated mutational landscape analysis of uterine leiomyosarcomas
J Choi, A Manzano, W Dong, S Bellone, E Bonazzoli, L Zammataro, X Yao, ...
Proceedings of the National Academy of Sciences 118 (15), e2025182118, 2021
612021
PCAWG Evolution & Heterogeneity Working Group. PCAWG Consortium The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578, 122-128, 2020
502020
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
432018
PCAWG Drivers and Functional Interpretation Working Group. PCAWG Structural Variation Working Group. PCAWG Consortium Analyses of non-coding somatic drivers in 2,658 cancer …
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
292020
Selective and mechanistic sources of recurrent rearrangements across the cancer genome
JA Wala, O Shapira, Y Li, D Craft, SE Schumacher, M Imielinski, JE Haber, ...
BioRxiv, 187609, 2017
292017
Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway
J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ...
Cell reports 34 (5), 2021
282021
PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-54, 2021
252021
Structural variant evolution after telomere crisis
SM Dewhurst, X Yao, J Rosiene, H Tian, J Behr, N Bosco, KK Takai, ...
Nature communications 12 (1), 2093, 2021
222021
Novel patterns of complex structural variation revealed across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, J Rosiene, ...
BioRxiv, 836296, 2019
152019
Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression
TG Paulson, PC Galipeau, KM Oman, CA Sanchez, MK Kuhner, LP Smith, ...
Nature communications 13 (1), 2300, 2022
142022
Most large structural variants in cancer genomes can be detected without long reads
ZN Choo, JM Behr, A Deshpande, K Hadi, X Yao, H Tian, K Takai, ...
Nature Genetics 55 (12), 2139-2148, 2023
72023
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13_Supplement), 3000-3000, 2018
72018
Long-molecule scars of backup DNA repair in BRCA1-and BRCA2-deficient cancers
J Setton, K Hadi, ZN Choo, KS Kuchin, H Tian, A Da Cruz Paula, ...
Nature 621 (7977), 129-137, 2023
42023
Somatic whole genome dynamics of precancer in Barrett’s esophagus
T Paulson, P Galipeau, K Oman, C Sanchez, M Kuhner, L Smith, K Hadi, ...
32021
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