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Nicholas P Schafer
Nicholas P Schafer
Constantiam Biosciences
Verified email at constantiambio.com - Homepage
Title
Cited by
Cited by
Year
AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing
A Davtyan, NP Schafer, W Zheng, C Clementi, PG Wolynes, GA Papoian
The Journal of Physical Chemistry B 116 (29), 8494-8503, 2012
3062012
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics
RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ...
Nucleic acids research 44 (W1), W356-W360, 2016
1892016
Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection
F Morcos, NP Schafer, RR Cheng, JN Onuchic, PG Wolynes
Proceedings of the National Academy of Sciences 111 (34), 12408-12413, 2014
1412014
Predictive energy landscapes for protein–protein association
W Zheng, NP Schafer, A Davtyan, GA Papoian, PG Wolynes
Proceedings of the National Academy of Sciences 109 (47), 19244-19249, 2012
1212012
Electrostatics, structure prediction, and the energy landscapes for protein folding and binding
MY Tsai, W Zheng, D Balamurugan, NP Schafer, BL Kim, MS Cheung, ...
Protein Science 25 (1), 255-269, 2016
882016
Frustration in the energy landscapes of multidomain protein misfolding
W Zheng, NP Schafer, PG Wolynes
Proceedings of the National Academy of Sciences 110 (5), 1680-1685, 2013
872013
Learning to fold proteins using energy landscape theory
NP Schafer, BL Kim, W Zheng, PG Wolynes
Israel journal of chemistry 54 (8‐9), 1311-1337, 2014
752014
Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops
W Paslawski, OK Lillelund, JV Kristensen, NP Schafer, RP Baker, S Urban, ...
Proceedings of the National Academy of Sciences 112 (26), 7978-7983, 2015
722015
Oleuropein derivatives from olive fruit extracts reduce α-synuclein fibrillation and oligomer toxicity
H Mohammad-Beigi, F Aliakbari, C Sahin, C Lomax, A Tawfike, ...
Journal of Biological Chemistry 294 (11), 4215-4232, 2019
652019
Free energy landscapes for initiation and branching of protein aggregation
W Zheng, NP Schafer, PG Wolynes
Proceedings of the National Academy of Sciences 110 (51), 20515-20520, 2013
462013
Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines
Q Wang, M Chen, NP Schafer, C Bueno, SS Song, A Hudmon, ...
Proceedings of the National Academy of Sciences 116 (38), 18937-18942, 2019
452019
Surveying biomolecular frustration at atomic resolution
M Chen, X Chen, NP Schafer, C Clementi, EA Komives, DU Ferreiro, ...
Nature communications 11 (1), 5944, 2020
442020
Predictive energy landscapes for folding α-helical transmembrane proteins
BL Kim, NP Schafer, PG Wolynes
Proceedings of the National Academy of Sciences 111 (30), 11031-11036, 2014
432014
PAGE4 and conformational switching: Insights from molecular dynamics simulations and implications for prostate cancer
X Lin, S Roy, MK Jolly, F Bocci, NP Schafer, MY Tsai, Y Chen, Y He, ...
Journal of molecular biology 430 (16), 2422-2438, 2018
382018
Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms
X Chen, M Chen, NP Schafer, PG Wolynes
Proceedings of the National Academy of Sciences 117 (8), 4125-4130, 2020
372020
Funneling and frustration in the energy landscapes of some designed and simplified proteins
HH Truong, BL Kim, NP Schafer, PG Wolynes
The Journal of chemical physics 139 (12), 2013
352013
Water mediated interactions and the protein folding phase diagram in the temperature–pressure plane
BJ Sirovetz, NP Schafer, PG Wolynes
The Journal of Physical Chemistry B 119 (34), 11416-11427, 2015
322015
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
W Lu, C Bueno, NP Schafer, J Moller, S Jin, X Chen, M Chen, X Gu, ...
PLoS computational biology 17 (2), e1008308, 2021
312021
The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks
J Liman, C Bueno, Y Eliaz, NP Schafer, MN Waxham, PG Wolynes, ...
Proceedings of the National Academy of Sciences 117 (20), 10825-10831, 2020
302020
Protein structure prediction: Making AWSEM AWSEM‐ER by adding evolutionary restraints
BJ Sirovetz, NP Schafer, PG Wolynes
Proteins: Structure, Function, and Bioinformatics 85 (11), 2127-2142, 2017
302017
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