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Nicholas R Waters
Nicholas R Waters
Memorial Sloan Kettering Cancer Cetner
Verified email at mskcc.org - Homepage
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
A spectrum of CodY activities drives metabolic reorganization and virulence gene expression in Staphylococcus aureus
NR Waters, DJ Samuels, RK Behera, J Livny, KY Rhee, MR Sadykov, ...
Molecular microbiology 101 (3), 495-514, 2016
852016
Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool
NR Waters, F Abram, F Brennan, A Holmes, L Pritchard
Access Microbiology 2 (9), e000143, 2020
752020
Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community
P Dessì, E Porca, NR Waters, AM Lakaniemi, G Collins, PNL Lens
International Journal of Hydrogen Energy 43 (11), 5473-5485, 2018
442018
Early intestinal microbial features are associated with CD4 T-cell recovery after allogeneic hematopoietic transplant
O Miltiadous, NR Waters, H Andrlová, A Dai, CL Nguyen, ...
Blood, The Journal of the American Society of Hematology 139 (18), 2758-2769, 2022
302022
The potential for polyphosphate metabolism in Archaea and anaerobic polyphosphate formation in Methanosarcina mazei
FS Paula, JP Chin, A Schnürer, B Müller, P Manesiotis, N Waters, ...
Scientific Reports 9 (1), 17101, 2019
232019
Conditioning regimens are associated with distinct patterns of microbiota injury in allogeneic hematopoietic cell transplantation
R Shouval, NR Waters, ALC Gomes, C Zuanelli Brambilla, T Fei, ...
Clinical Cancer Research 29 (1), 165-173, 2023
202023
Toward assessing farm-based anaerobic digestate public health risks: comparative investigation with slurry, effect of pasteurization treatments, and use of miniature …
S Nolan, NR Waters, F Brennan, A Auer, O Fenton, K Richards, DJ Bolton, ...
Frontiers in Sustainable Food Systems 2, 41, 2018
202018
A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients
J Yan, C Liao, BP Taylor, E Fontana, LA Amoretti, RJ Wright, ER Littmann, ...
Scientific Data 9 (1), 219, 2022
112022
High-resolution analyses of associations between medications, microbiome, and mortality in cancer patients
CL Nguyen, KA Markey, O Miltiadous, A Dai, N Waters, K Sadeghi, T Fei, ...
Cell 186 (12), 2705-2718. e17, 2023
102023
riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions
NR Waters, F Abram, F Brennan, A Holmes, L Pritchard
Nucleic Acids Research 46 (11), e68-e68, 2018
102018
Chordomics: a visualization tool for linking function to phylogeny in microbiomes
K McDonnell, N Waters, E Howley, F Abram
Bioinformatics 36 (4), 1309-1310, 2020
62020
Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool. Access Microbiol 2: acmi000143
NR Waters, F Abram, F Brennan, A Holmes, L Pritchard
62020
Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse
S DeWolf, Y Elhanati, K Nichols, NR Waters, CL Nguyen, JB Slingerland, ...
Science translational medicine 15 (706), eabq0476, 2023
42023
Absence of curli in soil-persistent Escherichia coli is mediated by a C-di-GMP signaling defect and suggests evidence of biofilm-independent niche specialization
YM Somorin, T Vollmerhausen, N Waters, L Pritchard, F Abram, ...
Frontiers in Microbiology 9, 368286, 2018
42018
Mitigation of gastrointestinal graft-versus-host disease with tocilizumab prophylaxis is accompanied by preservation of microbial diversity and attenuation of enterococcal …
S Chhabra, A Szabo, A Clurman, K McShane, N Waters, D Eastwood, ...
Haematologica 108 (1), 250, 2023
32023
Immune-related colitis is associated with fecal microbial dysbiosis and can be mitigated by fecal microbiota transplantation
A Elkrief, NR Waters, N Smith, A Dai, J Slingerland, N Aleynick, B Febles, ...
Cancer Immunology Research 12 (3), 308-321, 2024
12024
Scalable Log-ratio Lasso Regression Enhances Microbiome Feature Selection for Predictive Models.
T Fei, T Funnell, NR Waters, SS Raj, SM Devlin, A Dai, O Miltiadous, ...
Biorxiv: the Preprint Server for Biology, 2023
12023
Shotgun sequencing of serial fecal microbiome samples in patients with colorectal cancer reveals distinct bacterial species and metabolic pathways associated with tumor …
M Lumish, N Waters, J Leinwand, A Saxena, A Dai, T Fei, M Fox, ...
Cancer Research 84 (6_Supplement), 2805-2805, 2024
2024
Altered microbial bile acid metabolism exacerbates T cell-driven inflammation during graft-versus-host disease
S Lindner, O Miltiadous, RJF Ramos, J Paredes, AI Kousa, A Dai, T Fei, ...
Nature Microbiology, 1-17, 2024
2024
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