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Dibyendu Mondal
Dibyendu Mondal
UCSF Postdoctoral Scholar
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Exploring the mechanism of covalent inhibition: Simulating the binding free energy of α-ketoamide inhibitors of the main protease of SARS-CoV-2
D Mondal, A Warshel
Biochemistry 59 (48), 4601-4608, 2020
492020
EF-Tu and EF-G are activated by allosteric effects
D Mondal, A Warshel
Proceedings of the National Academy of Sciences 115 (13), 3386-3391, 2018
192018
Combinatorial approach for exploring conformational space and activation barriers in computer-aided enzyme design
D Mondal, V Kolev, A Warshel
ACS catalysis 10 (11), 6002-6012, 2020
182020
Exploring the Activation Process of the β2AR-Gs Complex
C Bai, J Wang, D Mondal, Y Du, RD Ye, A Warshel
Journal of the American Chemical Society 143 (29), 11044-11051, 2021
172021
Exploring the activation pathway and Gi-coupling specificity of the μ-opioid receptor
D Mondal, V Kolev, A Warshel
Proceedings of the National Academy of Sciences 117 (42), 26218-26225, 2020
172020
Exploring the effectiveness of binding free energy calculations
D Mondal, J Florian, A Warshel
The Journal of Physical Chemistry B 123 (42), 8910-8915, 2019
172019
Exploring alternative catalytic mechanisms of the Cas9 HNH domain
LN Zhao, D Mondal, A Warshel
Proteins: Structure, Function, and Bioinformatics 88 (2), 260-264, 2020
162020
Soluble TREM2 inhibits secondary nucleation of Aβ fibrillization and enhances cellular uptake of fibrillar Aβ
KD Belsare, H Wu, D Mondal, A Bond, E Castillo, J Jin, H Jo, AE Roush, ...
Proceedings of the National Academy of Sciences 119 (5), e2114486119, 2022
152022
Solvent thermodynamic driving force controls stacking interactions between polyaromatics
AS Rury, C Ferry, JR Hunt, M Lee, D Mondal, SMO O’Connell, ENH Phan, ...
The Journal of Physical Chemistry C 120 (41), 23858-23869, 2016
142016
Exploring the proteolysis mechanism of the proteasomes
A Saha, G Oanca, D Mondal, A Warshel
The Journal of Physical Chemistry B 124 (27), 5626-5635, 2020
132020
Exploring the drug resistance of HCV protease
G Jindal, D Mondal, A Warshel
The Journal of Physical Chemistry B 121 (28), 6831-6840, 2017
92017
Histidine protonation states are key in the LigI catalytic reaction mechanism
LN Zhao, D Mondal, W Li, Y Mu, P Kaldis
Proteins: Structure, Function, and Bioinformatics 90 (1), 123-130, 2022
22022
Quantum chemical investigation of thermochemistry in Calvin cycle
D Mondal, T Sadhukhan, IA Latif, SN Datta
Journal of Chemical Sciences 127, 2231-2240, 2015
22015
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Articles 1–13