COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 600 | 2021 |
Immunotherapy for breast cancer using EpCAM aptamer tumor-targeted gene knockdown Y Zhang, X Xie, PN Yeganeh, DJ Lee, D Valle-Garcia, KF Meza-Sosa, ... Proceedings of the National Academy of Sciences 118 (9), e2022830118, 2021 | 51 | 2021 |
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Biorxiv, 2021 | 39 | 2021 |
Dysregulation of AKT3 along with a small panel of mRNAs stratifies high-grade serous ovarian cancer from both normal epithelia and benign tumor tissues PN Yeganeh, C Richardson, Z Bahrani-Mostafavi, DL Tait, MT Mostafavi Genes & cancer 8 (11-12), 784, 2017 | 19 | 2017 |
Most pathways can be related to the pathogenesis of alzheimer’s disease SL Morgan, P Naderi, K Koler, Y Pita-Juarez, D Prokopenko, IS Vlachos, ... Frontiers in Aging Neuroscience 14, 846902, 2022 | 18 | 2022 |
Revisiting the use of graph centrality models in biological pathway analysis P Naderi Yeganeh, C Richardson, E Saule, A Loraine, M Taghi Mostafavi BioData mining 13 (1), 1-23, 2020 | 14 | 2020 |
Use of Machine Learning for Diagnosis of Cancer in Ovarian Tissues with a Selected mRNA Panel PN Yeganeh, MT Mostafavi IEEE BIBM Workshop on Application of Machine Learning and Signal Processing …, 2018 | 12 | 2018 |
Use of Structural Properties of Underlying Graphs in Pathway Enrichment Analysis of Genomic Data P Naderi Yeganeh, MT Mostafavi Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 4 | 2017 |
A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Y Pita-Juarez, D Karagkouni, N Kalavros, JC Melms, S Niezen, ... bioRxiv, 2022 | 3 | 2022 |
Causal Disturbance Analysis: A Novel Graph Centrality Based Method for Pathway Enrichment Analysis P Naderi Yeganeh, MT Mostafavi IEEE/ACM Transactions in Computational Biology and Bioinformatics, 2019 | 3 | 2019 |
Centrality of cancer-related genes in human biological pathways: A graph analysis perspective PN Yeganeh, E Saule, MT Mostafavi IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018 | 3 | 2018 |
PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs P Naderi Yeganeh, YY Teo, D Karagkouni, Y Pita-Juárez, SL Morgan, ... Briefings in bioinformatics 24 (6), bbad418, 2023 | 1 | 2023 |
Understanding Alzheimer’s disease resilience at the cellular level I Castanho, PN Yeganeh, W Hide Alzheimer's & Dementia 18, e061296, 2022 | 1 | 2022 |
PAX8 protein detection in serum of patients with serous ovarian cancer Z Bahrani-Mostafavi, PN Yeganeh, ME Parrott, C Richardson, DL Tait, ... Cancer Research 74 (19_Supplement), 875-875, 2014 | 1 | 2014 |
Systems analysis of Alzheimer’s disease pathway dysregulation in human subjects is recapitulated in 3d cellular models to reveal P38 MAPK as a therapeutic target that mitigates … PN Yeganeh, SS Kwak, M Jorfi, L Quinti, K Koler, Y Choi, J Park, ... Alzheimer's & Dementia 19, e063716, 2023 | | 2023 |
Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s SL Morgan, P Naderi, K Koler, Y Pita-Juarez, D Prokopenko, IS Vlachos, ... Progress of Translational Medicine in Alzheimer's Disease, 2022 | | 2022 |
INAUGURAL ARTICLE by a Recently Elected Academy Member: Immunotherapy for breast cancer using EpCAM aptamer tumor-targeted gene knockdown Y Zhang, X Xie, PN Yeganeh, DJ Lee, D Valle-Garcia, KF Meza-Sosa, ... Proceedings of the National Academy of Sciences of the United States of …, 2021 | | 2021 |
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 (preprint) TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... | | 2021 |
A comprehensive computational framework for interpretation of high-throughput cancer data using annotated pathways PN Yeganeh, MT Mostafavi Cancer Research 79 (13_Supplement), 2460-2460, 2019 | | 2019 |
Network-Based Pathway Enrichment Analysis for Biological Inference of High-Throughput Gene Expression Data PN Yeganeh The University of North Carolina at Charlotte, 2019 | | 2019 |