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Jiwoong Kim
Jiwoong Kim
Computational Biologist of UT Southwestern Medical Center
Verified email at utsouthwestern.edu
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Year
Poly-dipeptides encoded by the C9orf72 repeats bind nucleoli, impede RNA biogenesis, and kill cells
I Kwon, S Xiang, M Kato, L Wu, P Theodoropoulos, T Wang, J Kim, J Yun, ...
Science 345 (6201), 1139-1145, 2014
6492014
Metagenomic shotgun sequencing and unbiased metabolomic profiling identify specific human gut microbiota and metabolites associated with immune checkpoint therapy efficacy in …
AE Frankel, LA Coughlin, J Kim, TW Froehlich, Y Xie, EP Frenkel, AY Koh
Neoplasia 19 (10), 848-855, 2017
5612017
Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15
T Han, M Goralski, N Gaskill, E Capota, J Kim, TC Ting, Y Xie, ...
Science 356 (6336), eaal3755, 2017
4922017
Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization
D Fan, LA Coughlin, MM Neubauer, J Kim, MS Kim, X Zhan, ...
Nature medicine 21 (7), 808-814, 2015
3752015
Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus
J Zhao, EE Lee, J Kim, R Yang, B Chamseddin, C Ni, E Gusho, Y Xie, ...
Nature communications 10 (1), 2300, 2019
2602019
Widespread chromosomal losses and mitochondrial DNA alterations as genetic drivers in Hürthle cell carcinoma
RK Gopal, K Kübler, SE Calvo, P Polak, D Livitz, D Rosebrock, PM Sadow, ...
Cancer Cell 34 (2), 242-255. e5, 2018
2152018
Enhanced CRISPR-Cas9 correction of Duchenne muscular dystrophy in mice by a self-complementary AAV delivery system
Y Zhang, H Li, YL Min, E Sanchez-Ortiz, J Huang, AA Mireault, JM Shelton, ...
Science advances 6 (8), eaay6812, 2020
1462020
An oxidative central metabolism enables Salmonella to utilize microbiota-derived succinate
L Spiga, MG Winter, TF de Carvalho, W Zhu, ER Hughes, CC Gillis, ...
Cell host & microbe 22 (3), 291-301. e6, 2017
1462017
Antibiotic-induced depletion of anti-inflammatory clostridia is associated with the development of graft-versus-host disease in pediatric stem cell transplantation patients
TR Simms-Waldrip, G Sunkersett, LA Coughlin, MR Savani, C Arana, ...
Biology of Blood and Marrow Transplantation 23 (5), 820-829, 2017
1462017
Primary osteomyelitis caused by hypervirulent Klebsiella pneumoniae
BC Prokesch, M TeKippe, J Kim, P Raj, EME TeKippe, DE Greenberg
The Lancet Infectious Diseases 16 (9), e190-e195, 2016
1192016
Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes
WH Chung, N Jeong, J Kim, WK Lee, YG Lee, SH Lee, W Yoon, JH Kim, ...
DNA research 21 (2), 153-167, 2014
1142014
FMAP: functional mapping and analysis pipeline for metagenomics and metatranscriptomics studies
J Kim, MS Kim, AY Koh, Y Xie, X Zhan
BMC bioinformatics 17, 1-8, 2016
1042016
Aryl sulfonamides degrade RBM39 and RBM23 by recruitment to CRL4-DCAF15
TC Ting, M Goralski, K Klein, B Wang, J Kim, Y Xie, D Nijhawan
Cell Reports 29 (6), 1499-1510. e6, 2019
912019
Editing of the gut microbiota reduces carcinogenesis in mouse models of colitis-associated colorectal cancer
W Zhu, N Miyata, MG Winter, A Arenales, ER Hughes, L Spiga, J Kim, ...
Journal of experimental medicine 216 (10), 2378-2393, 2019
912019
The antitumor toxin CD437 is a direct inhibitor of DNA polymerase α
T Han, M Goralski, E Capota, SB Padrick, J Kim, Y Xie, D Nijhawan
Nature chemical biology 12 (7), 511-515, 2016
882016
A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers
SC Kim, Y Jung, J Park, S Cho, C Seo, J Kim, P Kim, J Park, J Seo, J Kim, ...
PloS one 8 (2), e55596, 2013
872013
Prediction of protein-protein interaction types using association rule based classification
SH Park, JA Reyes, DR Gilbert, JW Kim, S Kim
BMC bioinformatics 10, 1-15, 2009
792009
Severe gut microbiota dysbiosis is associated with poor growth in patients with short bowel syndrome
HG Piper, D Fan, LA Coughlin, EX Ho, MM McDaniel, N Channabasappa, ...
Journal of Parenteral and Enteral Nutrition 41 (7), 1202-1212, 2017
732017
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity
KT Lee, WH Chung, SY Lee, JW Choi, J Kim, D Lim, S Lee, GW Jang, ...
BMC genomics 14, 1-14, 2013
732013
VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning
J Kim, DE Greenberg, R Pifer, S Jiang, G Xiao, SA Shelburne, A Koh, ...
PLoS computational biology 16 (1), e1007511, 2020
702020
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