| eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019 | 2692 | 2019 |
| eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale CP Cantalapiedra, A Hernández-Plaza, I Letunic, P Bork, J Huerta-Cepas Molecular biology and evolution 38 (12), 5825-5829, 2021 | 1446 | 2021 |
| Profiling cellular diversity in sponges informs animal cell type and nervous system evolution JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ... Science 374 (6568), 717-723, 2021 | 159 | 2021 |
| proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ... Nucleic acids research 48 (D1), D621-D625, 2020 | 87 | 2020 |
| eggNOG 6.0: enabling comparative genomics across 12 535 organisms A Hernández-Plaza, D Szklarczyk, J Botas, CP Cantalapiedra, ... Nucleic Acids Research 51 (D1), D389-D394, 2023 | 67 | 2023 |
| The Quest for Orthologs benchmark service and consensus calls in 2020 AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ... Nucleic acids research 48 (W1), W538-W545, 2020 | 39 | 2020 |
| 559 Letunic I, Rattei T, Jensen LJ, von Mering C, Bork P. 2019. eggNOG 5.0: a hierarchical, 560 functionally and phylogenetically annotated orthology resource based on 5090 … J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic Acids Res 47, D309-D314, 0 | 19 | |
| Functional and evolutionary significance of unknown genes from uncultivated taxa Á Rodríguez del Río, J Giner-Lamia, CP Cantalapiedra, J Botas, Z Deng, ... bioRxiv, 2022.01. 26.477801, 2022 | 16 | 2022 |
| PhyloCloud: an online platform for making sense of phylogenomic data Z Deng, J Botas, CP Cantalapiedra, A Hernández-Plaza, ... Nucleic acids research 50 (W1), W577-W582, 2022 | 4 | 2022 |
| TreeProfiler: A command-line tool for computing and visualizing phylogenetic profiles against large trees Z Deng, A Hernández-Plaza, J Huerta-Cepas bioRxiv, 2023.09. 21.558621, 2023 | | 2023 |
